{
    "type": "genome",
    "identifier": "GCA_022573875.1",
    "organism": "Pseudomonadota bacterium",
    "title": "Pseudomonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Deep Sea Science and Engineering, Chines Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022573875.1",
        "bioproject": "PRJNA635214",
        "biosample": "SAMN16244086",
        "wgs_master": "JACZTC000000000.1",
        "refseq_category": "na",
        "taxid": "1977087",
        "species_taxid": "1977087",
        "organism_name": "Pseudomonadota bacterium",
        "infraspecific_name": "",
        "isolate": "B12T1B3",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/15",
        "asm_name": "ASM2257387v1",
        "submitter": "Institute of Deep Sea Science and Engineering, Chines Academy of Sciences",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/573/875/GCA_022573875.1_ASM2257387v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-15",
    "dateModified": "2022-03-15",
    "datePublished": "2022-03-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadota bacterium"
        ],
        "sample_taxid": [
            "1977087"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean: Mariana Trench"
        ],
        "sample_host_location_id": [],
        "data_size": "0.679 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 86.6,
        "contamination": 0.38,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2465378",
        "Number of Sequences": "521",
        "Longest Sequences (bp)": "21348",
        "N50 (bp)": "5351",
        "Gap Ratio (%)": "0.049607",
        "GCcontent (%)": "68.5",
        "Number of CDSs": "1970",
        "Average Protein Length": "287.5",
        "Coding Ratio (%)": "68.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "24",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pelagibius marinus",
                "strain": "strain=NBU2595",
                "accession": "GCA_014925385.1",
                "taxid": 2762760,
                "species_taxid": 2762760,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0095,
                "matched_fragments": 273,
                "total_fragments": 541,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tistlia consotensis",
                "strain": "strain=USBA 355",
                "accession": "GCA_900177295.1",
                "taxid": 1321365,
                "species_taxid": 1321365,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.686,
                "matched_fragments": 319,
                "total_fragments": 541,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tistlia consotensis",
                "strain": "strain=DSM 21585",
                "accession": "GCA_900188055.1",
                "taxid": 1321365,
                "species_taxid": 1321365,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6414,
                "matched_fragments": 323,
                "total_fragments": 541,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovibrio sodomensis",
                "strain": "strain=DSM 9895",
                "accession": "GCA_016583645.1",
                "taxid": 1088,
                "species_taxid": 1088,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0068,
                "matched_fragments": 216,
                "total_fragments": 541,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassobaculum fulvum",
                "strain": "strain=KCTC 42651",
                "accession": "GCA_014652915.1",
                "taxid": 1633335,
                "species_taxid": 1633335,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7367,
                "matched_fragments": 231,
                "total_fragments": 541,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hypericibacter adhaerens",
                "strain": "strain=R5959",
                "accession": "GCA_008728835.1",
                "taxid": 2602016,
                "species_taxid": 2602016,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5872,
                "matched_fragments": 205,
                "total_fragments": 541,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stella humosa",
                "strain": "strain=DSM 5900",
                "accession": "GCA_003751345.1",
                "taxid": 94,
                "species_taxid": 94,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4629,
                "matched_fragments": 174,
                "total_fragments": 541,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelagibius litoralis",
                "strain": "strain=DSM 21314",
                "accession": "GCA_011683915.1",
                "taxid": 374515,
                "species_taxid": 374515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4063,
                "matched_fragments": 187,
                "total_fragments": 541,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseospirillum parvum",
                "strain": "strain=930I",
                "accession": "GCA_900100455.1",
                "taxid": 83401,
                "species_taxid": 83401,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3881,
                "matched_fragments": 159,
                "total_fragments": 541,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseospira goensis",
                "strain": "strain=JA135",
                "accession": "GCA_014197795.1",
                "taxid": 391922,
                "species_taxid": 391922,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2605,
                "matched_fragments": 172,
                "total_fragments": 541,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum moscoviense",
                "strain": "strain=BB-1",
                "accession": "GCA_001650635.1",
                "taxid": 1437059,
                "species_taxid": 1437059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7659,
                "matched_fragments": 129,
                "total_fragments": 541,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kaistia adipata",
                "strain": "strain=DSM 17808",
                "accession": "GCA_000423225.1",
                "taxid": 166954,
                "species_taxid": 166954,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3661,
                "matched_fragments": 134,
                "total_fragments": 541,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 86.6,
            "contamination": 0.38,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014925385.1",
                "gtdb_species": "s__WHTV01 sp014925385",
                "ani": 79.0264,
                "matched_fragments": 272,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__Kiloniellaceae;g__WHTV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900177295.1",
                "gtdb_species": "s__Tistlia consotensis",
                "ani": 78.6675,
                "matched_fragments": 321,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__DSM-21159;g__Tistlia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_006969625.1",
                "gtdb_species": "s__Algihabitans sp006969625",
                "ani": 78.6231,
                "matched_fragments": 255,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__DSM-21159;g__Algihabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009377535.1",
                "gtdb_species": "s__WHTV01 sp009377535",
                "ani": 78.3734,
                "matched_fragments": 229,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__Kiloniellaceae;g__WHTV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001657395.1",
                "gtdb_species": "s__Pelagibius sp001657395",
                "ani": 78.161,
                "matched_fragments": 228,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__Kiloniellaceae;g__Pelagibius",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003693905.1",
                "gtdb_species": "s__J153 sp003693905",
                "ani": 78.0953,
                "matched_fragments": 148,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__J153;g__J153",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016583645.1",
                "gtdb_species": "s__Rhodovibrio sodomensis",
                "ani": 77.9952,
                "matched_fragments": 216,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__Rhodovibrionaceae;g__Rhodovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014652915.1",
                "gtdb_species": "s__Thalassobaculum_A fulvum",
                "ani": 77.7122,
                "matched_fragments": 232,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Thalassobaculales;f__Thalassobaculaceae;g__Thalassobaculum_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902729435.1",
                "gtdb_species": "s__Magnetospirillum sp902729435",
                "ani": 77.4902,
                "matched_fragments": 172,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Magnetospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_006739055.1",
                "gtdb_species": "s__Stella vacuolata",
                "ani": 77.4802,
                "matched_fragments": 215,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__ATCC43930;f__Stellaceae;g__Stella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900100455.1",
                "gtdb_species": "s__Roseospirillum parvum",
                "ani": 77.4071,
                "matched_fragments": 158,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Roseospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014197795.1",
                "gtdb_species": "s__Rhodospira goensis",
                "ani": 77.2801,
                "matched_fragments": 170,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Rhodospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_006738865.1",
                "gtdb_species": "s__Stella sp006738865",
                "ani": 77.1826,
                "matched_fragments": 200,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__ATCC43930;f__Stellaceae;g__Stella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014859895.1",
                "gtdb_species": "s__JACZKS01 sp014859895",
                "ani": 77.0426,
                "matched_fragments": 140,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__JAHDSF01;g__JACZKS01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016212565.1",
                "gtdb_species": "s__JACRFY01 sp016212565",
                "ani": 76.7256,
                "matched_fragments": 131,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__JACRFY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000423225.1",
                "gtdb_species": "s__Kaistia adipata",
                "ani": 76.4083,
                "matched_fragments": 131,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Kaistia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016756535.1",
                "gtdb_species": "s__Mesorhizobium sp016756535",
                "ani": 76.3389,
                "matched_fragments": 132,
                "total_fragments": 541,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Kiloniellales",
        "f__J153",
        "g__JACZWN01",
        "s__JACZWN01 sp022572105"
    ],
    "_genome_taxon": [
        "Pseudomonadota",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Kiloniellales",
        "f__J153",
        "g__JACZWN01",
        "s__JACZWN01 sp022572105",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Kiloniellales",
        "J153",
        "JACZWN01",
        "JACZWN01",
        "sp022572105"
    ],
    "_meo": [
        {
            "id": "MEO_0000040",
            "label": "marine sediment"
        },
        {
            "id": "MEO_0001378",
            "label": "deep"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}