{
    "type": "genome",
    "identifier": "GCA_022599865.1",
    "organism": "Betaproteobacteria bacterium",
    "title": "Betaproteobacteria bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Uppsala University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022599865.1",
        "bioproject": "PRJNA742377",
        "biosample": "SAMN20447847",
        "wgs_master": "JAHZLN000000000.1",
        "refseq_category": "na",
        "taxid": "1891241",
        "species_taxid": "1891241",
        "organism_name": "Betaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "O_S5_bin.8",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/16",
        "asm_name": "ASM2259986v1",
        "submitter": "Uppsala University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/599/865/GCA_022599865.1_ASM2259986v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-16",
    "dateModified": "2022-03-16",
    "datePublished": "2022-03-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Betaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "1891241"
        ],
        "sample_host_organism": [
            "Haliclona oculata"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands: Oosterschelde estury, Lokkersnol"
        ],
        "sample_host_location_id": [],
        "data_size": "0.447 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 9.09,
        "strain_heterogeneity": 25.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1564114",
        "Number of Sequences": "177",
        "Longest Sequences (bp)": "34194",
        "N50 (bp)": "10704",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.0",
        "Number of CDSs": "1470",
        "Average Protein Length": "286.3",
        "Coding Ratio (%)": "80.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_000023705.1",
                "taxid": 359408,
                "species_taxid": 359408,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 74,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylotenera versatilis",
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                "accession": "GCA_000093025.1",
                "taxid": 1055487,
                "species_taxid": 1055487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2824,
                "matched_fragments": 98,
                "total_fragments": 433,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 9.09,
            "strain_heterogeneity": 25.0
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        "gtdb_result": [
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                "accession": "GCA_018398995.1",
                "gtdb_species": "s__GCA-2401735 sp018398995",
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                "total_fragments": 433,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__GCA-2401735",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017857755.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__GCA-2401735",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_002401735.1",
                "gtdb_species": "s__GCA-2401735 sp002401735",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__GCA-2401735",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_006844635.1",
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                "matched_fragments": 123,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__GCA-2401735",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000744605.1",
                "gtdb_species": "s__Methylotenera sp000744605",
                "ani": 77.8332,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000023705.1",
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                "mean_intra_species_ani": "N/A",
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            },
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013141075.1",
                "gtdb_species": "s__Methylotenera sp013141075",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_002414145.1",
                "gtdb_species": "s__Methylophilus sp002414145",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylophilus",
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                "mean_intra_species_ani": "99.56",
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            },
            {
                "accession": "GCA_013141495.1",
                "gtdb_species": "s__Methylotenera sp013141495",
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                "matched_fragments": 80,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
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                "mean_intra_species_ani": "98.86",
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            },
            {
                "accession": "GCA_001464125.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_013141425.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_017880905.1",
                "gtdb_species": "s__Methylotenera_A sp017880905",
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                "matched_fragments": 61,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylotenera_A",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Methylophilaceae",
        "g__GCA-2401735",
        "s__GCA-2401735 sp022599515"
    ],
    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Methylophilaceae",
        "g__GCA-2401735",
        "s__GCA-2401735 sp022599515",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Methylophilaceae",
        "GCA-2401735",
        "GCA-2401735",
        "sp022599515"
    ],
    "_meo": [
        {
            "id": "MEO_0002677",
            "label": "sponge"
        },
        {
            "id": "MEO_0000087",
            "label": "estuary"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}