{
    "type": "genome",
    "identifier": "GCA_022600975.1",
    "organism": "Gammaproteobacteria bacterium",
    "title": "Gammaproteobacteria bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Uppsala University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022600975.1",
        "bioproject": "PRJNA742377",
        "biosample": "SAMN20447791",
        "wgs_master": "JAHZJJ000000000.1",
        "refseq_category": "na",
        "taxid": "1913989",
        "species_taxid": "1913989",
        "organism_name": "Gammaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "P_S1_bin.7",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/16",
        "asm_name": "ASM2260097v1",
        "submitter": "Uppsala University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/600/975/GCA_022600975.1_ASM2260097v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-16",
    "dateModified": "2022-03-16",
    "datePublished": "2022-03-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gammaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "1913989"
        ],
        "sample_host_organism": [
            "Halichondria panicea"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands: Oosterschelde estury, Oosterschelde/East"
        ],
        "sample_host_location_id": [],
        "data_size": "0.810 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2813549",
        "Number of Sequences": "179",
        "Longest Sequences (bp)": "63077",
        "N50 (bp)": "21867",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.1",
        "Number of CDSs": "2275",
        "Average Protein Length": "320.0",
        "Coding Ratio (%)": "77.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Microbulbifer flavimaris",
                "strain": "strain=WRN-8",
                "accession": "GCA_001641755.2",
                "taxid": 1781068,
                "species_taxid": 1781068,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0123,
                "matched_fragments": 52,
                "total_fragments": 852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbulbifer rhizosphaerae",
                "strain": "strain=CECT 8799",
                "accession": "GCA_014191725.1",
                "taxid": 1562603,
                "species_taxid": 1562603,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9798,
                "matched_fragments": 80,
                "total_fragments": 852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbulbifer hydrolyticus",
                "strain": "strain=IRE-31",
                "accession": "GCA_009931115.1",
                "taxid": 48074,
                "species_taxid": 48074,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8957,
                "matched_fragments": 69,
                "total_fragments": 852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbulbifer hainanensis",
                "strain": "strain=NBU-8HK146",
                "accession": "GCA_014904735.1",
                "taxid": 2735675,
                "species_taxid": 2735675,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.88,
                "matched_fragments": 63,
                "total_fragments": 852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbulbifer mangrovi",
                "strain": "strain=DD-13",
                "accession": "GCA_002009015.1",
                "taxid": 927787,
                "species_taxid": 927787,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7972,
                "matched_fragments": 70,
                "total_fragments": 852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbulbifer elongatus",
                "strain": "strain=DSM 6810",
                "accession": "GCA_022554105.1",
                "taxid": 86173,
                "species_taxid": 86173,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7148,
                "matched_fragments": 67,
                "total_fragments": 852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbulbifer elongatus",
                "strain": "strain=DSM 6810",
                "accession": "GCA_021165935.1",
                "taxid": 86173,
                "species_taxid": 86173,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6858,
                "matched_fragments": 69,
                "total_fragments": 852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbulbifer harenosus",
                "strain": "strain=HB161719",
                "accession": "GCA_005771435.1",
                "taxid": 2576840,
                "species_taxid": 2576840,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6799,
                "matched_fragments": 72,
                "total_fragments": 852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbulbifer taiwanensis",
                "strain": "strain=LMG 26125",
                "accession": "GCA_014904815.1",
                "taxid": 986746,
                "species_taxid": 986746,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5695,
                "matched_fragments": 74,
                "total_fragments": 852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbulbifer marinus",
                "strain": "strain=CGMCC 1.10657",
                "accession": "GCA_900107725.1",
                "taxid": 658218,
                "species_taxid": 658218,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5557,
                "matched_fragments": 80,
                "total_fragments": 852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbulbifer yueqingensis",
                "strain": "strain=CGMCC 1.10658",
                "accession": "GCA_900100355.1",
                "taxid": 658219,
                "species_taxid": 658219,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5388,
                "matched_fragments": 58,
                "total_fragments": 852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbulbifer donghaiensis",
                "strain": "strain=CGMCC 1.7063",
                "accession": "GCA_900129095.1",
                "taxid": 494016,
                "species_taxid": 494016,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3554,
                "matched_fragments": 65,
                "total_fragments": 852,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbulbifer variabilis",
                "strain": "strain=ATCC 700307",
                "accession": "GCA_000380565.1",
                "taxid": 266805,
                "species_taxid": 266805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3215,
                "matched_fragments": 77,
                "total_fragments": 852,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001641755.2",
                "gtdb_species": "s__Microbulbifer flavimaris",
                "ani": 77.0123,
                "matched_fragments": 52,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014904735.1",
                "gtdb_species": "s__Microbulbifer hainanensis",
                "ani": 76.88,
                "matched_fragments": 63,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017303155.1",
                "gtdb_species": "s__Microbulbifer salipaludis",
                "ani": 76.801,
                "matched_fragments": 64,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002009015.1",
                "gtdb_species": "s__Microbulbifer mangrovi",
                "ani": 76.7972,
                "matched_fragments": 70,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002959965.1",
                "gtdb_species": "s__Microbulbifer pacificus",
                "ani": 76.7075,
                "matched_fragments": 65,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000708675.1",
                "gtdb_species": "s__Microbulbifer sp000708675",
                "ani": 76.681,
                "matched_fragments": 71,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005771435.1",
                "gtdb_species": "s__Microbulbifer harenosus",
                "ani": 76.6799,
                "matched_fragments": 72,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.17",
                "min_intra_species_ani": "98.17",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013367775.1",
                "gtdb_species": "s__Microbulbifer sp013367775",
                "ani": 76.648,
                "matched_fragments": 74,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007183175.1",
                "gtdb_species": "s__Microbulbifer sp007183175",
                "ani": 76.6156,
                "matched_fragments": 65,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900107725.1",
                "gtdb_species": "s__Microbulbifer marinus",
                "ani": 76.5557,
                "matched_fragments": 80,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014904815.1",
                "gtdb_species": "s__Microbulbifer taiwanensis",
                "ani": 76.5443,
                "matched_fragments": 75,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900100355.1",
                "gtdb_species": "s__Microbulbifer yueqingensis",
                "ani": 76.5388,
                "matched_fragments": 58,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000220505.1",
                "gtdb_species": "s__Microbulbifer agarilyticus_B",
                "ani": 76.4493,
                "matched_fragments": 77,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001639145.1",
                "gtdb_species": "s__Microbulbifer sp001639145",
                "ani": 76.4194,
                "matched_fragments": 84,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900129095.1",
                "gtdb_species": "s__Microbulbifer donghaiensis",
                "ani": 76.3843,
                "matched_fragments": 66,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009363535.1",
                "gtdb_species": "s__Microbulbifer sp009363535",
                "ani": 76.3768,
                "matched_fragments": 66,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000380565.1",
                "gtdb_species": "s__Microbulbifer variabilis",
                "ani": 76.3215,
                "matched_fragments": 77,
                "total_fragments": 852,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Microbulbifer",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Cellvibrionaceae",
        "g__Microbulbifer",
        "s__Microbulbifer sp022600975"
    ],
    "_genome_taxon": [
        "Gammaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Cellvibrionaceae",
        "g__Microbulbifer",
        "s__Microbulbifer sp022600975",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Pseudomonadales",
        "Cellvibrionaceae",
        "Microbulbifer",
        "Microbulbifer",
        "sp022600975"
    ],
    "_meo": [
        {
            "id": "MEO_0002677",
            "label": "sponge"
        },
        {
            "id": "MEO_0000087",
            "label": "estuary"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}