{ "type": "genome", "identifier": "GCA_022641735.1", "organism": "Prevotella sp.", "title": "Prevotella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022641735.1", "bioproject": "PRJNA768554", "biosample": "SAMN22412602", "wgs_master": "JALCDQ000000000.1", "refseq_category": "na", "taxid": "59823", "species_taxid": "59823", "organism_name": "Prevotella sp.", "infraspecific_name": "", "isolate": "UW_TS_PREV2_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/21", "asm_name": "ASM2264173v1", "submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/641/735/GCA_022641735.1_ASM2264173v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-21", "dateModified": "2022-03-21", "datePublished": "2022-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella sp." ], "sample_taxid": [ "59823" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Madison, WI", "Freezer" ], "sample_host_location_id": [], "data_size": "0.730 MB", "sample_ph_range": { "min": 55.0, "max": 55.0 }, "sample_temperature_range": { "min": 35.0, "max": 80.0 }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2562169", "Number of Sequences": "33", "Longest Sequences (bp)": "490750", "N50 (bp)": "205266", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.6", "Number of CDSs": "1971", "Average Protein Length": "380.1", "Coding Ratio (%)": "87.7", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_025151535.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5565, "matched_fragments": 93, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_009495405.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 77.541, "matched_fragments": 93, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_000157935.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5102, "matched_fragments": 93, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_018128145.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 77.3382, "matched_fragments": 64, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella hominis", "strain": "strain=BCRC 81118", "accession": "GCA_004535825.1", "taxid": 2518605, "species_taxid": 2518605, "relation_to_type": "type", "validated": true, "ani": 77.3016, "matched_fragments": 89, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_001262015.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 77.289, "matched_fragments": 66, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=JCM 17724", "accession": "GCA_000614245.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 77.2205, "matched_fragments": 62, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 77.2054, "matched_fragments": 72, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella multiformis", "strain": "strain=DSM 16608", "accession": "GCA_000191065.1", "taxid": 282402, "species_taxid": 282402, "relation_to_type": "type", "validated": true, "ani": 77.1529, "matched_fragments": 54, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella paludivivens", "strain": "strain=JCM 13650", "accession": "GCA_000613605.1", "taxid": 185294, "species_taxid": 185294, "relation_to_type": "type", "validated": true, "ani": 77.0953, "matched_fragments": 91, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella paludivivens", "strain": "strain=DSM 17968", "accession": "GCA_000373185.1", "taxid": 185294, "species_taxid": 185294, "relation_to_type": "type", "validated": true, "ani": 77.0827, "matched_fragments": 92, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella stercorea", "strain": "strain=DSM 18206", "accession": "GCA_000235885.1", "taxid": 363265, "species_taxid": 363265, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0572, "matched_fragments": 60, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella bryantii", "strain": "strain=DSM 11371", "accession": "GCA_019973295.1", "taxid": 77095, "species_taxid": 77095, "relation_to_type": "type", "validated": true, "ani": 77.0211, "matched_fragments": 62, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=JCM 12258", "accession": "GCA_000613525.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 76.9022, "matched_fragments": 89, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella bryantii", "strain": "strain=B14", "accession": "GCA_022024235.1", "taxid": 77095, "species_taxid": 77095, "relation_to_type": "type", "validated": true, "ani": 76.8968, "matched_fragments": 62, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=DSM 11370", "accession": "GCA_000426565.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 76.8912, "matched_fragments": 92, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella cerevisiae", "strain": "strain=DSM 100619", "accession": "GCA_024054555.1", "taxid": 2053716, "species_taxid": 2053716, "relation_to_type": "type", "validated": true, "ani": 76.8549, "matched_fragments": 61, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella bergensis", "strain": "strain=DSM 17361", "accession": "GCA_000160535.1", "taxid": 242750, "species_taxid": 242750, "relation_to_type": "type", "validated": true, "ani": 76.8519, "matched_fragments": 51, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 76.8402, "matched_fragments": 51, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lacticifex", "strain": "strain=R5019", "accession": "GCA_019973375.1", "taxid": 2854755, "species_taxid": 2854755, "relation_to_type": "type", "validated": true, "ani": 76.6795, "matched_fragments": 66, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 76.6349, "matched_fragments": 64, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella dentasini", "strain": "strain=JCM 15908", "accession": "GCA_000614065.1", "taxid": 589537, "species_taxid": 589537, "relation_to_type": "type", "validated": true, "ani": 76.5092, "matched_fragments": 59, "total_fragments": 840, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900113305.1", "gtdb_species": "s__Prevotella sp900113305", "ani": 77.6205, "matched_fragments": 165, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015074785.1", "gtdb_species": "s__Prevotella sp015074785", "ani": 77.5897, "matched_fragments": 90, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.6733, "mean_intra_species_ani": "96.50", "min_intra_species_ani": "95.88", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.71", "num_clustered_genomes": 45, "status": "-" }, { "accession": "GCF_009494395.1", "gtdb_species": "s__Prevotella sp900546535", "ani": 77.4768, "matched_fragments": 90, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.78", "min_intra_species_ani": "96.11", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.79", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000157935.1", "gtdb_species": "s__Prevotella copri", "ani": 77.432, "matched_fragments": 94, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.6733, "mean_intra_species_ani": "96.34", "min_intra_species_ani": "95.85", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.69", "num_clustered_genomes": 97, "status": "-" }, { "accession": "GCF_001262015.1", "gtdb_species": "s__Prevotella fusca", "ani": 77.2891, "matched_fragments": 66, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003043945.1", "gtdb_species": "s__Prevotella sp003043945", "ani": 77.2877, "matched_fragments": 154, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.81", "min_intra_species_ani": "99.81", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_905210845.1", "gtdb_species": "s__Prevotella sp900556825", "ani": 77.2514, "matched_fragments": 76, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.73", "min_intra_species_ani": "99.73", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900315635.1", "gtdb_species": "s__Prevotella sp900315635", "ani": 77.203, "matched_fragments": 77, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.69", "min_intra_species_ani": "99.39", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900316015.1", "gtdb_species": "s__Prevotella sp900316015", "ani": 77.1309, "matched_fragments": 91, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.19", "min_intra_species_ani": "98.89", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.75", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003043925.1", "gtdb_species": "s__Prevotella sp003043925", "ani": 77.0565, "matched_fragments": 74, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_905236755.1", "gtdb_species": "s__Prevotella sp905236755", "ani": 76.9915, "matched_fragments": 89, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.83", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.68", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_002317385.1", "gtdb_species": "s__Prevotella sp002317385", "ani": 76.9597, "matched_fragments": 67, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017548525.1", "gtdb_species": "s__Prevotella sp017548525", "ani": 76.8966, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.33", "min_intra_species_ani": "99.33", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002451555.1", "gtdb_species": "s__Prevotella sp002451555", "ani": 76.5779, "matched_fragments": 74, "total_fragments": 840, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "99.47", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002297965.1", "gtdb_species": "s__Prevotella sp002297965", "ani": 76.5304, "matched_fragments": 62, "total_fragments": 840, "gtdb_taxonomy": 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