{
    "type": "genome",
    "identifier": "GCA_022643065.1",
    "organism": "Lacticaseibacillus paracasei",
    "title": "Lacticaseibacillus paracasei",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022643065.1",
        "bioproject": "PRJNA768559",
        "biosample": "SAMN22412506",
        "wgs_master": "JALCFH000000000.1",
        "refseq_category": "na",
        "taxid": "1597",
        "species_taxid": "1597",
        "organism_name": "Lacticaseibacillus paracasei",
        "infraspecific_name": "",
        "isolate": "UW_TS_LACCAS1_5",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/21",
        "asm_name": "ASM2264306v1",
        "submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/643/065/GCA_022643065.1_ASM2264306v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-21",
    "dateModified": "2022-03-21",
    "datePublished": "2022-03-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lacticaseibacillus paracasei"
        ],
        "sample_taxid": [
            "1597"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Madison, WI",
            "Freezer"
        ],
        "sample_host_location_id": [],
        "data_size": "0.780 MB",
        "sample_ph_range": {
            "min": 55.0,
            "max": 55.0
        },
        "sample_temperature_range": {
            "min": 35.0,
            "max": 80.0
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2722158",
        "Number of Sequences": "55",
        "Longest Sequences (bp)": "321178",
        "N50 (bp)": "67277",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.6",
        "Number of CDSs": "2595",
        "Average Protein Length": "297.6",
        "Coding Ratio (%)": "85.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Lacticaseibacillus paracasei subsp. paracasei",
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                "accession": "GCA_007989125.1",
                "taxid": 47714,
                "species_taxid": 1597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.4567,
                "matched_fragments": 768,
                "total_fragments": 880,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus paracasei subsp. paracasei",
                "strain": "strain=ATCC 25302",
                "accession": "GCA_000159495.1",
                "taxid": 47714,
                "species_taxid": 1597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.4181,
                "matched_fragments": 806,
                "total_fragments": 880,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus paracasei subsp. paracasei",
                "strain": "strain=DSM 5622",
                "accession": "GCA_001436385.1",
                "taxid": 47714,
                "species_taxid": 1597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.3884,
                "matched_fragments": 775,
                "total_fragments": 880,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus paracasei subsp. paracasei",
                "strain": "strain=ATCC 25302",
                "accession": "GCA_004354655.1",
                "taxid": 47714,
                "species_taxid": 1597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.3514,
                "matched_fragments": 794,
                "total_fragments": 880,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus paracasei subsp. paracasei",
                "strain": "strain=JCM 8130",
                "accession": "GCA_000829035.1",
                "taxid": 47714,
                "species_taxid": 1597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.2747,
                "matched_fragments": 813,
                "total_fragments": 880,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus casei",
                "strain": "strain=ATCC 393",
                "accession": "GCA_000829055.1",
                "taxid": 1582,
                "species_taxid": 1582,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.1603,
                "matched_fragments": 402,
                "total_fragments": 880,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000829035.1",
                "gtdb_species": "s__Lacticaseibacillus paracasei",
                "ani": 98.3411,
                "matched_fragments": 810,
                "total_fragments": 880,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "97.86",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 252,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000260435.1",
                "gtdb_species": "s__Lacticaseibacillus zeae",
                "ani": 80.4116,
                "matched_fragments": 403,
                "total_fragments": 880,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.07",
                "min_intra_species_ani": "96.92",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_000829055.1",
                "gtdb_species": "s__Lacticaseibacillus casei",
                "ani": 80.2295,
                "matched_fragments": 396,
                "total_fragments": 880,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "95.69",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_004123795.1",
                "gtdb_species": "s__Lacticaseibacillus chiayiensis",
                "ani": 79.9648,
                "matched_fragments": 394,
                "total_fragments": 880,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.62",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900636965.1",
                "gtdb_species": "s__Lacticaseibacillus rhamnosus",
                "ani": 79.927,
                "matched_fragments": 417,
                "total_fragments": 880,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
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                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 237,
                "status": "-"
            },
            {
                "accession": "GCF_003946165.1",
                "gtdb_species": "s__Lacticaseibacillus baoqingensis",
                "ani": 77.9907,
                "matched_fragments": 69,
                "total_fragments": 880,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001311785.1",
                "gtdb_species": "s__Lacticaseibacillus saniviri",
                "ani": 77.3151,
                "matched_fragments": 73,
                "total_fragments": 880,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.88",
                "min_intra_species_ani": "99.88",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001436115.1",
                "gtdb_species": "s__Lacticaseibacillus brantae",
                "ani": 76.9033,
                "matched_fragments": 70,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Lacticaseibacillus",
        "s__Lacticaseibacillus paracasei"
    ],
    "_genome_taxon": [
        "Lacticaseibacillus",
        "paracasei",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Lacticaseibacillus",
        "s__Lacticaseibacillus paracasei",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Lactobacillaceae",
        "Lacticaseibacillus",
        "Lacticaseibacillus",
        "paracasei"
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}