{ "type": "genome", "identifier": "GCA_022643175.1", "organism": "Acetobacter sp.", "title": "Acetobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022643175.1", "bioproject": "PRJNA768559", "biosample": "SAMN22412389", "wgs_master": "JALCFM000000000.1", "refseq_category": "na", "taxid": "440", "species_taxid": "440", "organism_name": "Acetobacter sp.", "infraspecific_name": "", "isolate": "UW_TS_ACET2_12", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/21", "asm_name": "ASM2264317v1", "submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/643/175/GCA_022643175.1_ASM2264317v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-21", "dateModified": "2022-03-21", "datePublished": "2022-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter sp." ], "sample_taxid": [ "440" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Madison, WI", "Freezer" ], "sample_host_location_id": [], "data_size": "0.871 MB", "sample_ph_range": { "min": 55.0, "max": 55.0 }, "sample_temperature_range": { "min": 35.0, "max": 80.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3059905", "Number of Sequences": "37", "Longest Sequences (bp)": "405254", "N50 (bp)": "108009", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.8", "Number of CDSs": "2733", "Average Protein Length": "326.0", "Coding Ratio (%)": "87.3", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter aceti", "strain": "strain=DSM 3508", "accession": "GCA_004341595.1", "taxid": 435, "species_taxid": 435, "relation_to_type": "type", "validated": true, "ani": 78.0734, "matched_fragments": 145, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter aceti", "strain": "strain=NBRC 14818", "accession": "GCA_000193495.2", "taxid": 435, "species_taxid": 435, "relation_to_type": "type", "validated": true, "ani": 77.9938, "matched_fragments": 144, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter aceti", "strain": "strain=NBRC 14818", "accession": "GCA_000963905.1", "taxid": 435, "species_taxid": 435, "relation_to_type": "type", "validated": true, "ani": 77.9013, "matched_fragments": 138, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter europaeus", "strain": "strain=type strain:LMG 18890", "accession": "GCA_000285295.1", "taxid": 33995, "species_taxid": 33995, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6431, "matched_fragments": 105, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter vitians", "strain": "strain=LMG 31484", "accession": "GCA_015244565.1", "taxid": 2728102, "species_taxid": 2728102, "relation_to_type": "type", "validated": true, "ani": 77.6243, "matched_fragments": 89, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter oeni", "strain": "strain=LMG 21952", "accession": "GCA_011516825.1", "taxid": 304077, "species_taxid": 304077, "relation_to_type": "type", 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"total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter orleanensis", "strain": "strain=LMG 1583", "accession": "GCA_001581005.1", "taxid": 104099, "species_taxid": 104099, "relation_to_type": "type", "validated": true, "ani": 77.2727, "matched_fragments": 110, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter papayae", "strain": "strain=JCM 25143", "accession": "GCA_000613285.1", "taxid": 1076592, "species_taxid": 1076592, "relation_to_type": "type", "validated": true, "ani": 77.2641, "matched_fragments": 113, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter orleanensis", "strain": "strain=JCM 7639T", "accession": "GCA_000964205.1", "taxid": 104099, "species_taxid": 104099, "relation_to_type": "type", "validated": true, "ani": 77.2113, "matched_fragments": 105, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter orleanensis", "strain": "strain=NBRC 13752", "accession": "GCA_006539325.1", "taxid": 104099, "species_taxid": 104099, "relation_to_type": "type", "validated": true, "ani": 77.1427, "matched_fragments": 106, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter oboediens", "strain": "strain=LMG 18849", "accession": "GCA_003207815.1", "taxid": 65958, "species_taxid": 65958, "relation_to_type": "type", "validated": true, "ani": 77.1351, "matched_fragments": 111, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter cerevisiae", "strain": "strain=LMG 1625", "accession": "GCA_001580535.1", "taxid": 178900, "species_taxid": 178900, "relation_to_type": "type", "validated": true, "ani": 77.116, "matched_fragments": 110, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novacetimonas hansenii", "strain": "strain=NBRC 14820", "accession": "GCA_006539705.1", "taxid": 436, "species_taxid": 436, "relation_to_type": "type", "validated": true, "ani": 77.0757, "matched_fragments": 95, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter swingsii", "strain": "strain=LMG 22125", "accession": "GCA_003207895.1", "taxid": 215220, "species_taxid": 215220, "relation_to_type": "type", "validated": true, "ani": 77.0569, "matched_fragments": 95, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter pasteurianus subsp. pasteurianus", "strain": "strain=IFO 3191", "accession": "GCA_000241625.2", "taxid": 481145, "species_taxid": 438, "relation_to_type": "type", "validated": true, "ani": 76.9974, "matched_fragments": 84, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novacetimonas hansenii", "strain": "strain=JCM 7643", "accession": "GCA_000964405.1", "taxid": 436, "species_taxid": 436, "relation_to_type": "type", "validated": true, "ani": 76.9965, "matched_fragments": 90, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novacetimonas pomaceti", "strain": "strain=T5K1", "accession": "GCA_003207955.1", "taxid": 2021998, "species_taxid": 2021998, "relation_to_type": "type", "validated": true, "ani": 76.9287, "matched_fragments": 98, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter pasteurianus subsp. pasteurianus", "strain": "strain=NBRC 106471", "accession": "GCA_003850805.1", "taxid": 481145, "species_taxid": 438, "relation_to_type": "type", "validated": true, "ani": 76.8402, "matched_fragments": 85, "total_fragments": 1004, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novacetimonas cocois", "strain": "strain=WE7", "accession": "GCA_003311635.1", 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"coccus_cell_shape": 0.1, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.2, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Acetobacterales", "f__Acetobacteraceae", "g__Acetobacter", "s__Acetobacter sp012517935" ], "_genome_taxon": [ "Acetobacter", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Acetobacterales", "f__Acetobacteraceae", "g__Acetobacter", "s__Acetobacter sp012517935", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Acetobacterales", "Acetobacteraceae", "Acetobacter", "Acetobacter", "sp012517935" ], "_meo": [ { "id": "MEO_0000119", "label": "bioreactor" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }