{ "type": "genome", "identifier": "GCA_022646045.1", "organism": "Acetobacter indonesiensis", "title": "Acetobacter indonesiensis", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022646045.1", "bioproject": "PRJNA768569", "biosample": "SAMN22412344", "wgs_master": "JALCIW000000000.1", "refseq_category": "na", "taxid": "104101", "species_taxid": "104101", "organism_name": "Acetobacter indonesiensis", "infraspecific_name": "", "isolate": "UW_TS_ACET6_2", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/21", "asm_name": "ASM2264604v1", "submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/646/045/GCA_022646045.1_ASM2264604v1", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-21", "dateModified": "2022-03-21", "datePublished": "2022-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter indonesiensis" ], "sample_taxid": [ "104101" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Madison, WI", "Freezer" ], "sample_host_location_id": [], "data_size": "0.667 MB", "sample_ph_range": { "min": 5395120886.0, "max": 5395120886.0 }, "sample_temperature_range": { "min": 35.0, "max": 80.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2345587", "Number of Sequences": "25", "Longest Sequences (bp)": "302942", "N50 (bp)": "133774", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.1", "Number of CDSs": "2150", "Average Protein Length": "321.0", "Coding Ratio (%)": "88.3", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter indonesiensis", "strain": "strain=NBRC 16471", "accession": "GCA_007991075.1", "taxid": 104101, "species_taxid": 104101, "relation_to_type": "type", "validated": true, "ani": 96.9209, "matched_fragments": 723, "total_fragments": 770, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter indonesiensis", "strain": "strain=5H-1", "accession": "GCA_000963945.1", "taxid": 104101, "species_taxid": 104101, "relation_to_type": "type", "validated": true, "ani": 96.9059, "matched_fragments": 727, "total_fragments": 770, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter senegalensis", "strain": "strain=LMG 23690", "accession": "GCA_001580995.1", "taxid": 446692, "species_taxid": 446692, "relation_to_type": "type", "validated": true, "ani": 81.3197, "matched_fragments": 508, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter tropicalis", "strain": "strain=LMG 19825", "accession": "GCA_001580915.1", "taxid": 104102, "species_taxid": 104102, "relation_to_type": "type", "validated": true, "ani": 81.2352, "matched_fragments": 522, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter tropicalis", "strain": "strain=NBRC 16470", "accession": "GCA_000787635.2", "taxid": 104102, "species_taxid": 104102, "relation_to_type": "type", "validated": true, "ani": 81.2087, "matched_fragments": 527, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter tropicalis", "strain": "strain=NBRC 16470", "accession": "GCA_007989245.1", "taxid": 104102, "species_taxid": 104102, "relation_to_type": "type", "validated": true, "ani": 81.1781, "matched_fragments": 538, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter orleanensis", "strain": "strain=JCM 7639T", "accession": "GCA_000964205.1", "taxid": 104099, "species_taxid": 104099, "relation_to_type": "type", "validated": true, "ani": 79.6701, "matched_fragments": 357, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter orleanensis", "strain": "strain=LMG 1583", "accession": "GCA_001581005.1", "taxid": 104099, "species_taxid": 104099, "relation_to_type": "type", "validated": true, "ani": 79.6034, "matched_fragments": 372, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter cerevisiae", "strain": "strain=LMG 1625", "accession": "GCA_001580535.1", "taxid": 178900, 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