{ "type": "genome", "identifier": "GCA_022646825.1", "organism": "Acetobacter fabarum", "title": "Acetobacter fabarum", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022646825.1", "bioproject": "PRJNA768571", "biosample": "SAMN22412360", "wgs_master": "JALCJQ000000000.1", "refseq_category": "na", "taxid": "483199", "species_taxid": "483199", "organism_name": "Acetobacter fabarum", "infraspecific_name": "", "isolate": "UW_TS_ACET1_6", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/21", "asm_name": "ASM2264682v1", "submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/646/825/GCA_022646825.1_ASM2264682v1", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-21", "dateModified": "2022-03-21", "datePublished": "2022-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter fabarum" ], "sample_taxid": [ "483199" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Madison, WI", "Freezer" ], "sample_host_location_id": [], "data_size": "0.623 MB", "sample_ph_range": { "min": 5410883107.0, "max": 5410883107.0 }, "sample_temperature_range": { "min": 54.0, "max": 80.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2211319", "Number of Sequences": "24", "Longest Sequences (bp)": "409355", "N50 (bp)": "137730", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.1", "Number of CDSs": "2051", "Average Protein Length": "322.9", "Coding Ratio (%)": "89.8", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter fabarum", "strain": "strain=LMG 24244", "accession": "GCA_011516925.1", "taxid": 483199, "species_taxid": 483199, "relation_to_type": "type", "validated": true, "ani": 98.2438, "matched_fragments": 697, "total_fragments": 725, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acetobacter lovaniensis", "strain": "strain=LMG 1617", "accession": "GCA_011516875.1", "taxid": 104100, "species_taxid": 104100, "relation_to_type": "type", "validated": true, "ani": 94.3711, "matched_fragments": 689, "total_fragments": 725, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter lovaniensis", "strain": 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"Alphaproteobacteria", "Acetobacterales", "Acetobacteraceae", "Acetobacter", "Acetobacter", "fabarum" ], "_meo": [ { "id": "MEO_0000119", "label": "bioreactor" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }