{ "type": "genome", "identifier": "GCA_022646965.1", "organism": "Heyndrickxia oleronia", "title": "Heyndrickxia oleronia", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022646965.1", "bioproject": "PRJNA768572", "biosample": "SAMN22412409", "wgs_master": "JALCJX000000000.1", "refseq_category": "na", "taxid": "38875", "species_taxid": "38875", "organism_name": "Heyndrickxia oleronia", "infraspecific_name": "", "isolate": "UW_TS_BAC2_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/21", "asm_name": "ASM2264696v1", "submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCF_022646965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/646/965/GCA_022646965.1_ASM2264696v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-21", "dateModified": "2022-03-21", "datePublished": "2022-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Heyndrickxia oleronia" ], "sample_taxid": [ "38875" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Madison, WI", "Freezer" ], "sample_host_location_id": [], "data_size": "1.405 MB", "sample_ph_range": { "min": 447053567813765.0, "max": 447053567813765.0 }, "sample_temperature_range": { "min": 55.0, "max": 80.0 }, "completeness": 64.58, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4977134", "Number of Sequences": "78", "Longest Sequences (bp)": "292960", "N50 (bp)": "101624", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.8", "Number of CDSs": "4988", "Average Protein Length": "274.5", "Coding Ratio (%)": "82.5", "Number of rRNAs": "5", "Number of tRNAs": "101", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_025263665.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 98.3017, "matched_fragments": 1466, "total_fragments": 1616, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_017809215.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 98.2685, "matched_fragments": 1469, "total_fragments": 1616, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_002009555.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 98.1063, "matched_fragments": 1238, "total_fragments": 1616, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Heyndrickxia sporothermodurans", "strain": "strain=DSM 10599", "accession": "GCA_003055085.1", "taxid": 46224, "species_taxid": 46224, "relation_to_type": "type", "validated": true, "ani": 79.0146, "matched_fragments": 404, "total_fragments": 1616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Heyndrickxia sporothermodurans", "strain": "strain=DSM 10599", "accession": "GCA_016785185.1", "taxid": 46224, "species_taxid": 46224, "relation_to_type": "type", "validated": true, "ani": 78.9607, "matched_fragments": 435, "total_fragments": 1616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Margalitia camelliae", "strain": "strain=7578-1", "accession": "GCA_002844575.1", "taxid": 1707093, "species_taxid": 1707093, "relation_to_type": "type", "validated": true, "ani": 77.4808, "matched_fragments": 239, "total_fragments": 1616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus bambusae", "strain": "strain=BG109", "accession": "GCA_017497975.1", "taxid": 2795218, "species_taxid": 2795218, "relation_to_type": "type", "validated": true, "ani": 76.9612, "matched_fragments": 113, "total_fragments": 1616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus citreus", "strain": "strain=FJAT-50051", "accession": "GCA_018343545.2", "taxid": 2833578, "species_taxid": 2833578, "relation_to_type": "type", "validated": true, "ani": 76.9169, "matched_fragments": 90, "total_fragments": 1616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus dafuensis", "strain": "strain=FJAT-25496", "accession": "GCA_007995155.1", "taxid": 1742359, "species_taxid": 1742359, "relation_to_type": "type", "validated": true, "ani": 76.4988, "matched_fragments": 130, "total_fragments": 1616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus mesonae", "strain": "strain=FJAT-13985", "accession": "GCA_001636315.1", "taxid": 1193713, "species_taxid": 1193713, "relation_to_type": "type", "validated": true, "ani": 76.4757, "matched_fragments": 109, "total_fragments": 1616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus kokaensis", "strain": "strain=LOB 377", "accession": "GCA_014656545.1", "taxid": 2759023, "species_taxid": 2759023, "relation_to_type": "type", "validated": true, "ani": 76.3308, "matched_fragments": 107, "total_fragments": 1616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus composti", "strain": "strain=DSM 24785", "accession": "GCA_016908465.1", "taxid": 720633, "species_taxid": 720633, "relation_to_type": "type", "validated": true, "ani": 76.1914, "matched_fragments": 62, "total_fragments": 1616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutcliffiella halmapala", "strain": "strain=DSM 8723", "accession": "GCA_002019665.1", "taxid": 79882, "species_taxid": 79882, "relation_to_type": "type", "validated": true, "ani": 76.1898, "matched_fragments": 93, "total_fragments": 1616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus selenatarsenatis", "strain": "strain=SF-1", "accession": "GCA_000813125.1", "taxid": 388741, "species_taxid": 388741, "relation_to_type": "type", "validated": true, "ani": 75.9495, "matched_fragments": 56, "total_fragments": 1616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus suaedaesalsae", "strain": "strain=RD4P76", "accession": "GCA_016890225.1", "taxid": 2810349, "species_taxid": 2810349, "relation_to_type": "type", "validated": true, "ani": 75.8773, "matched_fragments": 88, "total_fragments": 1616, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 64.58, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017809215.1", "gtdb_species": "s__Heyndrickxia oleronia", "ani": 98.2556, "matched_fragments": 1470, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Heyndrickxia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "97.33", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_016772275.1", "gtdb_species": "s__Heyndrickxia vini", "ani": 79.0297, "matched_fragments": 493, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Heyndrickxia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016756695.1", "gtdb_species": "s__Heyndrickxia sporothermodurans", "ani": 78.9838, "matched_fragments": 464, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Heyndrickxia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.73", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.84", "num_clustered_genomes": 38, "status": "-" }, { "accession": "GCA_018333075.1", "gtdb_species": "s__Heyndrickxia sporothermodurans_A", "ani": 78.6477, "matched_fragments": 541, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Heyndrickxia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001420715.1", "gtdb_species": "s__Margalitia shackletonii", "ani": 77.8829, "matched_fragments": 293, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Margalitia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "98.74", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002844575.1", "gtdb_species": "s__Margalitia camelliae", "ani": 77.4461, "matched_fragments": 239, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Margalitia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.53", "min_intra_species_ani": "99.53", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018343615.1", "gtdb_species": "s__Margalitia sp018343615", "ani": 77.2992, "matched_fragments": 230, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Margalitia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007995155.1", "gtdb_species": "s__Cytobacillus dafuensis", "ani": 76.4988, "matched_fragments": 130, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_010975035.1", "gtdb_species": "s__Neobacillus thermocopriae", "ani": 76.4751, "matched_fragments": 96, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.41", "min_intra_species_ani": "95.38", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018343665.1", "gtdb_species": "s__Cytobacillus sp018343665", "ani": 76.3807, "matched_fragments": 127, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002560985.1", "gtdb_species": "s__Bacillus_A sp002560985", "ani": 76.3698, "matched_fragments": 76, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014656545.1", "gtdb_species": "s__Neobacillus sp014656545", "ani": 76.3424, "matched_fragments": 107, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002797375.1", "gtdb_species": "s__FJAT-46582 sp002797375", "ani": 76.3209, "matched_fragments": 66, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Domibacillaceae;g__FJAT-46582", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.55", "min_intra_species_ani": "96.55", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002019665.1", "gtdb_species": "s__Sutcliffiella_A halmapala", "ani": 76.2683, "matched_fragments": 95, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_I;g__Sutcliffiella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002261155.1", "gtdb_species": "s__FJAT-46582 sp002261155", "ani": 76.2417, "matched_fragments": 77, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Domibacillaceae;g__FJAT-46582", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016908465.1", "gtdb_species": "s__Ureibacillus composti", "ani": 76.221, "matched_fragments": 61, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Ureibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018424685.1", "gtdb_species": "s__Mesobacillus boroniphilus_A", "ani": 76.0002, "matched_fragments": 64, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Mesobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000832985.1", "gtdb_species": "s__Priestia megaterium", "ani": 75.959, "matched_fragments": 94, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_H;g__Priestia", "ani_circumscription_radius": 95.5311, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "95.69", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.73", "num_clustered_genomes": 151, "status": "-" }, { "accession": "GCF_000813125.1", "gtdb_species": "s__Mesobacillus selenatarsenatis", "ani": 75.9495, "matched_fragments": 56, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Mesobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016841285.1", "gtdb_species": "s__Calidifontibacillus sp016841285", "ani": 75.8077, "matched_fragments": 59, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_C;f__Bacillaceae_J;g__Calidifontibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002835805.1", "gtdb_species": "s__Niallia nealsonii", "ani": 75.7318, "matched_fragments": 114, "total_fragments": 1616, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Niallia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota", "c__Bacilli", "o__Bacillales_B", "f__Bacillaceae_C", "g__Heyndrickxia", "s__Heyndrickxia oleronia" ], "_genome_taxon": [ "Heyndrickxia", "oleronia", "d__Bacteria", "p__Bacillota", "c__Bacilli", "o__Bacillales_B", "f__Bacillaceae_C", "g__Heyndrickxia", "s__Heyndrickxia oleronia", "Bacteria", "Bacillota", "Bacilli", "Bacillales", "B", "Bacillaceae", "C", "Heyndrickxia", "Heyndrickxia", "oleronia" ], "_meo": [ { "id": "MEO_0000119", "label": "bioreactor" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }