{ "type": "genome", "identifier": "GCA_022648475.1", "organism": "Leuconostoc mesenteroides", "title": "Leuconostoc mesenteroides", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022648475.1", "bioproject": "PRJNA768581", "biosample": "SAMN22412264", "wgs_master": "JALCML000000000.1", "refseq_category": "na", "taxid": "1245", "species_taxid": "1245", "organism_name": "Leuconostoc mesenteroides", "infraspecific_name": "", "isolate": "UW_MP_LEUC1_6", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/21", "asm_name": "ASM2264847v1", "submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/648/475/GCA_022648475.1_ASM2264847v1", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-21", "dateModified": "2022-03-21", "datePublished": "2022-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Leuconostoc mesenteroides" ], "sample_taxid": [ "1245" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Madison, WI", "Freezer" ], "sample_host_location_id": [], "data_size": "0.427 MB", "sample_ph_range": { "min": 55.0, "max": 55.0 }, "sample_temperature_range": { "min": 35.0, "max": 80.0 }, "completeness": 81.94, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1496327", "Number of Sequences": "79", "Longest Sequences (bp)": "72429", "N50 (bp)": "23347", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.9", "Number of CDSs": "1468", "Average Protein Length": "288.9", "Coding Ratio (%)": "85.0", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leuconostoc mesenteroides subsp. mesenteroides", "strain": "strain=ATCC 8293", "accession": "GCA_000014445.1", "taxid": 33967, "species_taxid": 1245, "relation_to_type": "type", "validated": true, "ani": 99.2027, "matched_fragments": 433, "total_fragments": 465, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leuconostoc mesenteroides", "strain": "strain=NCTC12954", "accession": "GCA_900461615.1", "taxid": 1245, "species_taxid": 1245, "relation_to_type": "type", "validated": true, "ani": 99.1679, "matched_fragments": 434, "total_fragments": 465, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leuconostoc mesenteroides subsp. mesenteroides", "strain": "strain=NBRC 100496", "accession": "GCA_007990165.1", "taxid": 33967, "species_taxid": 1245, "relation_to_type": "type", "validated": true, "ani": 99.144, "matched_fragments": 431, "total_fragments": 465, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leuconostoc mesenteroides subsp. jonggajibkimchii", "strain": "strain=DRC1506", "accession": "GCA_001886915.1", "taxid": 2026657, "species_taxid": 1245, "relation_to_type": "type", "validated": true, "ani": 98.957, "matched_fragments": 425, "total_fragments": 465, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leuconostoc mesenteroides subsp. dextranicum", "strain": "strain=NBRC 100495", "accession": "GCA_007990145.1", "taxid": 33966, "species_taxid": 1245, "relation_to_type": "type", "validated": true, "ani": 98.9082, "matched_fragments": 393, "total_fragments": 465, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leuconostoc mesenteroides subsp. dextranicum", "strain": "strain=DSM 20484", "accession": "GCA_001047695.1", "taxid": 33966, "species_taxid": 1245, "relation_to_type": "type", "validated": true, "ani": 98.7919, "matched_fragments": 408, "total_fragments": 465, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leuconostoc mesenteroides subsp. cremoris", "strain": "strain=ATCC 19254", "accession": "GCA_000160595.1", "taxid": 33965, "species_taxid": 1245, "relation_to_type": "type", "validated": true, "ani": 98.1521, "matched_fragments": 392, "total_fragments": 465, "ani_threshold": 95, "status": "conclusive" } ], "cc_result": { "completeness": 81.94, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_000014445.1", "gtdb_species": "s__Leuconostoc mesenteroides", "ani": 99.2027, "matched_fragments": 433, "total_fragments": 465, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc", 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