{
    "type": "genome",
    "identifier": "GCA_022649045.1",
    "organism": "Serratia liquefaciens",
    "title": "Serratia liquefaciens",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022649045.1",
        "bioproject": "PRJNA768584",
        "biosample": "SAMN22412230",
        "wgs_master": "JALCNM000000000.1",
        "refseq_category": "na",
        "taxid": "614",
        "species_taxid": "614",
        "organism_name": "Serratia liquefaciens",
        "infraspecific_name": "",
        "isolate": "UW_MP_ENTER2_2",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/21",
        "asm_name": "ASM2264904v1",
        "submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/649/045/GCA_022649045.1_ASM2264904v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-21",
    "dateModified": "2022-03-21",
    "datePublished": "2022-03-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Serratia liquefaciens"
        ],
        "sample_taxid": [
            "614"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Madison, WI",
            "Freezer"
        ],
        "sample_host_location_id": [],
        "data_size": "1.456 MB",
        "sample_ph_range": {
            "min": 55.0,
            "max": 55.0
        },
        "sample_temperature_range": {
            "min": 35.0,
            "max": 80.0
        },
        "completeness": 76.91,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5135840",
        "Number of Sequences": "26",
        "Longest Sequences (bp)": "578773",
        "N50 (bp)": "362414",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.5",
        "Number of CDSs": "4742",
        "Average Protein Length": "317.2",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "72",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Serratia liquefaciens",
                "strain": "strain=ATCC 27592",
                "accession": "GCA_000422085.1",
                "taxid": 614,
                "species_taxid": 614,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.8794,
                "matched_fragments": 1610,
                "total_fragments": 1701,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Serratia quinivorans",
                "strain": "strain=NCTC11544",
                "accession": "GCA_900457075.1",
                "taxid": 137545,
                "species_taxid": 137545,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.2103,
                "matched_fragments": 1452,
                "total_fragments": 1701,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia proteamaculans",
                "strain": "strain=CCUG 14510",
                "accession": "GCA_008830365.1",
                "taxid": 28151,
                "species_taxid": 28151,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.1666,
                "matched_fragments": 1441,
                "total_fragments": 1701,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia plymuthica",
                "strain": "strain=FDAARGOS_895",
                "accession": "GCA_016027675.1",
                "taxid": 82996,
                "species_taxid": 82996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.9587,
                "matched_fragments": 1343,
                "total_fragments": 1701,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia inhibens",
                "strain": "strain=S40",
                "accession": "GCA_003591175.1",
                "taxid": 2338073,
                "species_taxid": 2338073,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8591,
                "matched_fragments": 1341,
                "total_fragments": 1701,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia plymuthica",
                "strain": "strain=NBRC 102599",
                "accession": "GCA_001590925.1",
                "taxid": 82996,
                "species_taxid": 82996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8487,
                "matched_fragments": 1336,
                "total_fragments": 1701,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia grimesii",
                "strain": "strain=NBRC 13537",
                "accession": "GCA_001590905.1",
                "taxid": 82995,
                "species_taxid": 82995,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6624,
                "matched_fragments": 1387,
                "total_fragments": 1701,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia grimesii",
                "strain": "strain=NCTC11543",
                "accession": "GCA_900456935.1",
                "taxid": 82995,
                "species_taxid": 82995,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.634,
                "matched_fragments": 1392,
                "total_fragments": 1701,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia entomophila",
                "strain": "strain=A1",
                "accession": "GCA_021462285.1",
                "taxid": 42906,
                "species_taxid": 42906,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3579,
                "matched_fragments": 1255,
                "total_fragments": 1701,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia nevei",
                "strain": "strain=S15",
                "accession": "GCA_008364245.1",
                "taxid": 2703794,
                "species_taxid": 2703794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4925,
                "matched_fragments": 1232,
                "total_fragments": 1701,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia bockelmannii",
                "strain": "strain=S3",
                "accession": "GCA_008011855.1",
                "taxid": 2703793,
                "species_taxid": 2703793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3345,
                "matched_fragments": 1203,
                "total_fragments": 1701,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella rivi",
                "strain": "strain=FC061912-K",
                "accession": "GCA_019049655.1",
                "taxid": 2816249,
                "species_taxid": 2816249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1451,
                "matched_fragments": 611,
                "total_fragments": 1701,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella perminowiae",
                "strain": "strain=SL6",
                "accession": "GCA_019049755.1",
                "taxid": 2816244,
                "species_taxid": 2816244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.956,
                "matched_fragments": 485,
                "total_fragments": 1701,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 76.91,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000422085.1",
                "gtdb_species": "s__Serratia liquefaciens",
                "ani": 98.8794,
                "matched_fragments": 1610,
                "total_fragments": 1701,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.63",
                "min_intra_species_ani": "98.20",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 25,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_012719855.1",
                "gtdb_species": "s__Serratia liquefaciens_A",
                "ani": 95.0813,
                "matched_fragments": 1523,
                "total_fragments": 1701,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.92",
                "min_intra_species_ani": "97.90",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_900457075.1",
                "gtdb_species": "s__Serratia quinivorans",
                "ani": 88.2103,
                "matched_fragments": 1452,
                "total_fragments": 1701,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.38",
                "min_intra_species_ani": "95.64",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_008830365.1",
                "gtdb_species": "s__Serratia proteamaculans",
                "ani": 88.1666,
                "matched_fragments": 1441,
                "total_fragments": 1701,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "95.51",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_013337185.1",
                "gtdb_species": "s__Serratia proteamaculans_D",
                "ani": 88.0016,
                "matched_fragments": 1430,
                "total_fragments": 1701,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.78",
                "min_intra_species_ani": "95.57",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_018336935.1",
                "gtdb_species": "s__Serratia plymuthica_B",
                "ani": 86.9369,
                "matched_fragments": 1340,
                "total_fragments": 1701,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003591175.1",
                "gtdb_species": "s__Serratia inhibens",
                "ani": 86.8591,
                "matched_fragments": 1341,
                "total_fragments": 1701,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.90",
                "min_intra_species_ani": "95.73",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001590925.1",
                "gtdb_species": "s__Serratia plymuthica",
                "ani": 86.8487,
                "matched_fragments": 1336,
                "total_fragments": 1701,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "96.52",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCF_017832355.1",
                "gtdb_species": "s__Serratia sp017832355",
                "ani": 86.8406,
                "matched_fragments": 1428,
                "total_fragments": 1701,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001590905.1",
                "gtdb_species": "s__Serratia grimesii",
                "ani": 86.6589,
                "matched_fragments": 1388,
                "total_fragments": 1701,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.09",
                "min_intra_species_ani": "98.89",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.158,
        "cell_length": 0.113,
        "doubling_h": -0.246,
        "growth_tmp": 30.0,
        "optimum_tmp": 26.0,
        "optimum_ph": 6.8,
        "genome_size": 5274371.0,
        "gc_content": 54.771,
        "coding_genes": 4837.6,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 84.75,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae",
        "g__Serratia_J",
        "s__Serratia_J liquefaciens"
    ],
    "_genome_taxon": [
        "Serratia",
        "liquefaciens",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae",
        "g__Serratia_J",
        "s__Serratia_J liquefaciens",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Enterobacterales",
        "Enterobacteriaceae",
        "Serratia",
        "J",
        "Serratia",
        "J",
        "liquefaciens"
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}