{
    "type": "genome",
    "identifier": "GCA_022653015.1",
    "organism": "Candidatus Methanomethylophilus sp.",
    "title": "Candidatus Methanomethylophilus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022653015.1",
        "bioproject": "PRJNA768594",
        "biosample": "SAMN22412278",
        "wgs_master": "JALCSC000000000.1",
        "refseq_category": "na",
        "taxid": "2774294",
        "species_taxid": "2774294",
        "organism_name": "Candidatus Methanomethylophilus sp.",
        "infraspecific_name": "",
        "isolate": "UW_MP_METH1_2",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/21",
        "asm_name": "ASM2265301v1",
        "submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/653/015/GCA_022653015.1_ASM2265301v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-21",
    "dateModified": "2022-03-21",
    "datePublished": "2022-03-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Methanomethylophilus sp."
        ],
        "sample_taxid": [
            "2774294"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Madison, WI",
            "Freezer"
        ],
        "sample_host_location_id": [],
        "data_size": "0.476 MB",
        "sample_ph_range": {
            "min": 55.0,
            "max": 55.0
        },
        "sample_temperature_range": {
            "min": 35.0,
            "max": 80.0
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1696215",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "433605",
        "N50 (bp)": "254682",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.5",
        "Number of CDSs": "1637",
        "Average Protein Length": "310.8",
        "Coding Ratio (%)": "90.0",
        "Number of rRNAs": "4",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001481295.1",
                "gtdb_species": "s__Methanomethylophilus sp001481295",
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                "matched_fragments": 477,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__Methanomethylophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.77",
                "min_intra_species_ani": "97.29",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 13,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002503545.1",
                "gtdb_species": "s__Methanomethylophilus sp002503545",
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                "matched_fragments": 218,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__Methanomethylophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000300255.2",
                "gtdb_species": "s__Methanomethylophilus alvus",
                "ani": 80.0449,
                "matched_fragments": 227,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__Methanomethylophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.45",
                "min_intra_species_ani": "99.02",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_902787415.1",
                "gtdb_species": "s__Methanomethylophilus sp902787415",
                "ani": 79.5567,
                "matched_fragments": 170,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__Methanomethylophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.47",
                "min_intra_species_ani": "96.90",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_015063225.1",
                "gtdb_species": "s__Methanomethylophilus sp015063225",
                "ani": 78.9441,
                "matched_fragments": 172,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__Methanomethylophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009911715.1",
                "gtdb_species": "s__UBA71 sp006954425",
                "ani": 78.6151,
                "matched_fragments": 157,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.86",
                "min_intra_species_ani": "96.86",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902763685.1",
                "gtdb_species": "s__Methanomethylophilus sp902763685",
                "ani": 78.6008,
                "matched_fragments": 159,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__Methanomethylophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017461225.1",
                "gtdb_species": "s__UBA71 sp017461225",
                "ani": 77.4917,
                "matched_fragments": 128,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016297775.1",
                "gtdb_species": "s__SIG5 sp016297775",
                "ani": 76.8927,
                "matched_fragments": 62,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__SIG5",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.79",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Thermoplasmatota",
        "c__Thermoplasmata",
        "o__Methanomassiliicoccales",
        "f__Methanomethylophilaceae",
        "g__Methanomethylophilus",
        "s__Methanomethylophilus sp001481295"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Methanomethylophilus",
        "sp.",
        "d__Archaea",
        "p__Thermoplasmatota",
        "c__Thermoplasmata",
        "o__Methanomassiliicoccales",
        "f__Methanomethylophilaceae",
        "g__Methanomethylophilus",
        "s__Methanomethylophilus sp001481295",
        "Archaea",
        "Thermoplasmatota",
        "Thermoplasmata",
        "Methanomassiliicoccales",
        "Methanomethylophilaceae",
        "Methanomethylophilus",
        "Methanomethylophilus",
        "sp001481295"
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}