{
    "type": "genome",
    "identifier": "GCA_022653095.1",
    "organism": "Lachnospiraceae bacterium",
    "title": "Lachnospiraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022653095.1",
        "bioproject": "PRJNA768594",
        "biosample": "SAMN22412250",
        "wgs_master": "JALCSD000000000.1",
        "refseq_category": "na",
        "taxid": "1898203",
        "species_taxid": "1898203",
        "organism_name": "Lachnospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "UW_MP_LCO1_2",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/21",
        "asm_name": "ASM2265309v1",
        "submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/653/095/GCA_022653095.1_ASM2265309v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-21",
    "dateModified": "2022-03-21",
    "datePublished": "2022-03-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lachnospiraceae bacterium"
        ],
        "sample_taxid": [
            "1898203"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Madison, WI",
            "Freezer"
        ],
        "sample_host_location_id": [],
        "data_size": "0.611 MB",
        "sample_ph_range": {
            "min": 55.0,
            "max": 55.0
        },
        "sample_temperature_range": {
            "min": 35.0,
            "max": 80.0
        },
        "completeness": 62.5,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2151523",
        "Number of Sequences": "31",
        "Longest Sequences (bp)": "261241",
        "N50 (bp)": "148887",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.8",
        "Number of CDSs": "1930",
        "Average Protein Length": "330.3",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_000156535.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9788,
                "matched_fragments": 101,
                "total_fragments": 704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_900537995.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8692,
                "matched_fragments": 106,
                "total_fragments": 704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia faecis",
                "strain": "strain=M72",
                "accession": "GCA_001406815.1",
                "taxid": 301302,
                "species_taxid": 301302,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.606,
                "matched_fragments": 140,
                "total_fragments": 704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia hominis",
                "strain": "strain=A2-183",
                "accession": "GCA_000225345.1",
                "taxid": 301301,
                "species_taxid": 301301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.79,
                "matched_fragments": 77,
                "total_fragments": 704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia lenta",
                "strain": "strain=NSJ-9",
                "accession": "GCA_014287435.1",
                "taxid": 2763061,
                "species_taxid": 2763061,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8913,
                "matched_fragments": 50,
                "total_fragments": 704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia porci",
                "strain": "strain=MUC/MUC-530-WT-4D",
                "accession": "GCA_009695765.1",
                "taxid": 2605790,
                "species_taxid": 2605790,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7194,
                "matched_fragments": 102,
                "total_fragments": 704,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agathobacter ruminis",
                "strain": "strain=JK623",
                "accession": "GCA_002735305.1",
                "taxid": 1712665,
                "species_taxid": 1712665,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4299,
                "matched_fragments": 62,
                "total_fragments": 704,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 62.5,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000020605.1",
                "gtdb_species": "s__Agathobacter rectalis",
                "ani": 97.1628,
                "matched_fragments": 547,
                "total_fragments": 704,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.37",
                "min_intra_species_ani": "96.06",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.65",
                "num_clustered_genomes": 151,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900317585.1",
                "gtdb_species": "s__Agathobacter sp900317585",
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                "matched_fragments": 491,
                "total_fragments": 704,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.18",
                "min_intra_species_ani": "95.52",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCA_900546625.1",
                "gtdb_species": "s__Agathobacter sp900546625",
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                "matched_fragments": 536,
                "total_fragments": 704,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.96",
                "min_intra_species_ani": "96.96",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905209075.1",
                "gtdb_species": "s__Agathobacter sp905209075",
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                "matched_fragments": 250,
                "total_fragments": 704,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "97.67",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_900548765.1",
                "gtdb_species": "s__Agathobacter sp900548765",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
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                "mean_intra_species_ani": "97.03",
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                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_900552085.1",
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                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 7,
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            },
            {
                "accession": "GCF_002735305.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
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                "mean_intra_species_ani": "98.23",
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCA_910587655.1",
                "gtdb_species": "s__Agathobacter sp910587655",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.239,
        "cell_length": 0.277,
        "doubling_h": 0.394,
        "growth_tmp": 37.0,
        "optimum_tmp": 36.16,
        "optimum_ph": 6.363,
        "genome_size": 3641163.5,
        "gc_content": 42.852,
        "coding_genes": 3283.347,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 63.727,
        "gram_stain": 0.885,
        "sporulation": 0.414,
        "motility": 0.448,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.988,
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        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
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        "bacillus_cell_shape": 0.8,
        "coccus_cell_shape": 0.133,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.033,
        "vibrio_cell_shape": 0.033,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Agathobacter",
        "s__Agathobacter rectalis"
    ],
    "_genome_taxon": [
        "Lachnospiraceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Agathobacter",
        "s__Agathobacter rectalis",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Agathobacter",
        "Agathobacter",
        "rectalis"
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}