{
    "type": "genome",
    "identifier": "GCA_022654615.1",
    "organism": "Leuconostoc mesenteroides",
    "title": "Leuconostoc mesenteroides",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022654615.1",
        "bioproject": "PRJNA768598",
        "biosample": "SAMN22412263",
        "wgs_master": "JALCTQ000000000.1",
        "refseq_category": "na",
        "taxid": "1245",
        "species_taxid": "1245",
        "organism_name": "Leuconostoc mesenteroides",
        "infraspecific_name": "",
        "isolate": "UW_MP_LEUC1_5",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/21",
        "asm_name": "ASM2265461v1",
        "submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/654/615/GCA_022654615.1_ASM2265461v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-21",
    "dateModified": "2022-03-21",
    "datePublished": "2022-03-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leuconostoc mesenteroides"
        ],
        "sample_taxid": [
            "1245"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Madison, WI",
            "Freezer"
        ],
        "sample_host_location_id": [],
        "data_size": "0.476 MB",
        "sample_ph_range": {
            "min": 55.0,
            "max": 55.0
        },
        "sample_temperature_range": {
            "min": 35.0,
            "max": 80.0
        },
        "completeness": 76.04,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1667924",
        "Number of Sequences": "65",
        "Longest Sequences (bp)": "125643",
        "N50 (bp)": "31576",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.6",
        "Number of CDSs": "1624",
        "Average Protein Length": "294.5",
        "Coding Ratio (%)": "86.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Leuconostoc mesenteroides subsp. mesenteroides",
                "strain": "strain=NBRC 100496",
                "accession": "GCA_007990165.1",
                "taxid": 33967,
                "species_taxid": 1245,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.2077,
                "matched_fragments": 486,
                "total_fragments": 526,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leuconostoc mesenteroides subsp. mesenteroides",
                "strain": "strain=ATCC 8293",
                "accession": "GCA_000014445.1",
                "taxid": 33967,
                "species_taxid": 1245,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.1869,
                "matched_fragments": 492,
                "total_fragments": 526,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leuconostoc mesenteroides",
                "strain": "strain=NCTC12954",
                "accession": "GCA_900461615.1",
                "taxid": 1245,
                "species_taxid": 1245,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.1842,
                "matched_fragments": 493,
                "total_fragments": 526,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leuconostoc mesenteroides subsp. dextranicum",
                "strain": "strain=NBRC 100495",
                "accession": "GCA_007990145.1",
                "taxid": 33966,
                "species_taxid": 1245,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.9241,
                "matched_fragments": 416,
                "total_fragments": 526,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leuconostoc mesenteroides subsp. jonggajibkimchii",
                "strain": "strain=DRC1506",
                "accession": "GCA_001886915.1",
                "taxid": 2026657,
                "species_taxid": 1245,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.7392,
                "matched_fragments": 476,
                "total_fragments": 526,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leuconostoc mesenteroides subsp. dextranicum",
                "strain": "strain=DSM 20484",
                "accession": "GCA_001047695.1",
                "taxid": 33966,
                "species_taxid": 1245,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.6312,
                "matched_fragments": 439,
                "total_fragments": 526,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Leuconostoc mesenteroides subsp. cremoris",
                "strain": "strain=ATCC 19254",
                "accession": "GCA_000160595.1",
                "taxid": 33965,
                "species_taxid": 1245,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.9287,
                "matched_fragments": 399,
                "total_fragments": 526,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 76.04,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000014445.1",
                "gtdb_species": "s__Leuconostoc mesenteroides",
                "ani": 99.1869,
                "matched_fragments": 492,
                "total_fragments": 526,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
                "min_intra_species_ani": "97.34",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 89,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001891125.1",
                "gtdb_species": "s__Leuconostoc suionicum",
                "ani": 93.982,
                "matched_fragments": 472,
                "total_fragments": 526,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "97.05",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_009676745.1",
                "gtdb_species": "s__Leuconostoc mesenteroides_B",
                "ani": 90.6322,
                "matched_fragments": 425,
                "total_fragments": 526,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_008107645.1",
                "gtdb_species": "s__Leuconostoc litchii",
                "ani": 81.8116,
                "matched_fragments": 327,
                "total_fragments": 526,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014634805.1",
                "gtdb_species": "s__Leuconostoc falkenbergense",
                "ani": 80.0012,
                "matched_fragments": 170,
                "total_fragments": 526,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
                "min_intra_species_ani": "96.75",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 34,
                "status": "-"
            },
            {
                "accession": "GCF_007954625.1",
                "gtdb_species": "s__Leuconostoc lactis_A",
                "ani": 79.5864,
                "matched_fragments": 100,
                "total_fragments": 526,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.86",
                "min_intra_species_ani": "96.88",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000092505.1",
                "gtdb_species": "s__Leuconostoc kimchii",
                "ani": 79.4027,
                "matched_fragments": 138,
                "total_fragments": 526,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.55",
                "min_intra_species_ani": "99.53",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.149,
        "cell_length": 0.058,
        "doubling_h": null,
        "growth_tmp": 28.333,
        "optimum_tmp": 27.885,
        "optimum_ph": 5.899,
        "genome_size": 1970116.542,
        "gc_content": 37.176,
        "coding_genes": 1887.389,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 69.467,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Leuconostoc",
        "s__Leuconostoc mesenteroides"
    ],
    "_genome_taxon": [
        "Leuconostoc",
        "mesenteroides",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Leuconostoc",
        "s__Leuconostoc mesenteroides",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Lactobacillaceae",
        "Leuconostoc",
        "Leuconostoc",
        "mesenteroides"
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}