{ "type": "genome", "identifier": "GCA_022654875.1", "organism": "Lactococcus lactis", "title": "Lactococcus lactis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022654875.1", "bioproject": "PRJNA768599", "biosample": "SAMN22412335", "wgs_master": "JALCTW000000000.1", "refseq_category": "na", "taxid": "1358", "species_taxid": "1358", "organism_name": "Lactococcus lactis", "infraspecific_name": "", "isolate": "UW_MP_STREP1_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/21", "asm_name": "ASM2265487v1", "submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/654/875/GCA_022654875.1_ASM2265487v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-21", "dateModified": "2022-03-21", "datePublished": "2022-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactococcus lactis" ], "sample_taxid": [ "1358" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Madison, WI", "Freezer" ], "sample_host_location_id": [], "data_size": "0.639 MB", "sample_ph_range": { "min": 55.0, "max": 55.0 }, "sample_temperature_range": { "min": 35.0, "max": 80.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2274000", "Number of Sequences": "67", "Longest Sequences (bp)": "251455", "N50 (bp)": "39112", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.0", "Number of CDSs": "2153", "Average Protein Length": "297.5", "Coding Ratio (%)": "84.5", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactococcus lactis subsp. lactis", "strain": "strain=ATCC 19435", "accession": "GCA_001456385.1", "taxid": 1360, "species_taxid": 1358, "relation_to_type": "type", "validated": true, "ani": 97.744, "matched_fragments": 619, "total_fragments": 724, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactococcus lactis", "strain": "strain=ATCC 19435", "accession": "GCA_900099625.1", "taxid": 1358, "species_taxid": 1358, "relation_to_type": "type", "validated": true, "ani": 97.6443, "matched_fragments": 633, "total_fragments": 724, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactococcus lactis", "strain": "strain=FDAARGOS_865", "accession": "GCA_016028835.1", "taxid": 1358, "species_taxid": 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78.4766, "matched_fragments": 125, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus paracarnosus", "strain": "strain=TMW 2.1615", "accession": "GCA_006770285.1", "taxid": 2749962, "species_taxid": 2749962, "relation_to_type": "type", "validated": true, "ani": 77.2084, "matched_fragments": 54, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900099625.1", "gtdb_species": "s__Lactococcus lactis", "ani": 97.6443, "matched_fragments": 633, "total_fragments": 724, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.37", "min_intra_species_ani": "97.03", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.82", "num_clustered_genomes": 223, "status": 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