{ "type": "genome", "identifier": "GCA_022655115.1", "organism": "Bifidobacterium thermacidophilum", "title": "Bifidobacterium thermacidophilum", "description": "derived from metagenome; incomplete metagenome", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022655115.1", "bioproject": "PRJNA768599", "biosample": "SAMN22412167", "wgs_master": "JALCUC000000000.1", "refseq_category": "na", "taxid": "246618", "species_taxid": "246618", "organism_name": "Bifidobacterium thermacidophilum", "infraspecific_name": "", "isolate": "UW_MP_BIF18_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/21", "asm_name": "ASM2265511v1", "submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCF_022655115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/655/115/GCA_022655115.1_ASM2265511v1", "excluded_from_refseq": "derived from metagenome; incomplete metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-21", "dateModified": "2022-03-21", "datePublished": "2022-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium thermacidophilum" ], "sample_taxid": [ "246618" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Madison, WI", "Freezer" ], "sample_host_location_id": [], "data_size": "0.510 MB", "sample_ph_range": { "min": 55.0, "max": 55.0 }, "sample_temperature_range": { "min": 35.0, "max": 80.0 }, "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1802032", "Number of Sequences": "63", "Longest Sequences (bp)": "109101", "N50 (bp)": "37474", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.5", "Number of CDSs": "1344", "Average Protein Length": "362.7", "Coding Ratio (%)": "81.2", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium thermacidophilum subsp. thermacidophilum", "strain": "strain=DSM 15837", "accession": "GCA_000771005.1", "taxid": 79262, "species_taxid": 246618, "relation_to_type": "type", "validated": true, "ani": 97.5999, "matched_fragments": 527, "total_fragments": 569, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bifidobacterium thermacidophilum subsp. thermacidophilum", "strain": "strain=DSM 15837", "accession": "GCA_000426425.1", "taxid": 79262, "species_taxid": 246618, "relation_to_type": "type", "validated": true, "ani": 97.5794, "matched_fragments": 531, "total_fragments": 569, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bifidobacterium thermacidophilum subsp. thermacidophilum", "strain": "strain=LMG 21395", "accession": "GCA_000741455.1", "taxid": 79262, "species_taxid": 246618, "relation_to_type": "type", "validated": true, "ani": 97.5718, "matched_fragments": 531, "total_fragments": 569, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bifidobacterium porcinum", "strain": "strain=DSM 17755", "accession": "GCA_000771045.1", "taxid": 212365, "species_taxid": 212365, "relation_to_type": "type", "validated": true, "ani": 95.8386, "matched_fragments": 499, "total_fragments": 569, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bifidobacterium apri", "strain": "strain=DSM 100238", "accession": "GCA_009299485.1", "taxid": 1769423, "species_taxid": 1769423, "relation_to_type": "type", "validated": true, "ani": 86.7312, "matched_fragments": 485, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium boum", "strain": "strain=DSM 20432", "accession": "GCA_000771385.1", "taxid": 78343, "species_taxid": 78343, "relation_to_type": "type", "validated": true, "ani": 86.1298, "matched_fragments": 448, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium amazonense", "strain": "strain=MA1", "accession": "GCA_018555435.2", "taxid": 2809027, "species_taxid": 2809027, "relation_to_type": "type", "validated": true, "ani": 79.7905, "matched_fragments": 240, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium miconisargentati", "strain": "strain=82T25", "accession": "GCA_019331675.1", "taxid": 2834437, "species_taxid": 2834437, "relation_to_type": "type", "validated": true, "ani": 79.7543, "matched_fragments": 234, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium commune", "strain": "strain=DSM 28792", "accession": "GCA_014191315.1", "taxid": 1505727, "species_taxid": 1505727, "relation_to_type": "type", "validated": true, "ani": 77.7729, "matched_fragments": 61, "total_fragments": 569, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000771265.1", "gtdb_species": "s__Bifidobacterium thermophilum", "ani": 96.1091, "matched_fragments": 514, "total_fragments": 569, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.72", "min_intra_species_ani": "95.35", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 15, "status": "conclusive" }, { "accession": "GCA_000741495.1", "gtdb_species": "s__Bifidobacterium thermophilum_A", "ani": 87.8979, "matched_fragments": 438, "total_fragments": 569, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009299485.1", "gtdb_species": "s__Bifidobacterium apri", "ani": 86.7312, "matched_fragments": 485, "total_fragments": 569, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000741535.1", 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