{
    "type": "genome",
    "identifier": "GCA_022701635.1",
    "organism": "Burkholderiaceae bacterium",
    "title": "Burkholderiaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Iowa State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022701635.1",
        "bioproject": "PRJNA800073",
        "biosample": "SAMN25223865",
        "wgs_master": "JAKOOD000000000.1",
        "refseq_category": "na",
        "taxid": "2030806",
        "species_taxid": "2030806",
        "organism_name": "Burkholderiaceae bacterium",
        "infraspecific_name": "",
        "isolate": "S61",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2270163v1",
        "submitter": "Iowa State University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/701/635/GCA_022701635.1_ASM2270163v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Burkholderiaceae bacterium"
        ],
        "sample_taxid": [
            "2030806"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Hickory Corners, Michigan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.513 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 78.12,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5478725",
        "Number of Sequences": "724",
        "Longest Sequences (bp)": "57360",
        "N50 (bp)": "9604",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.0",
        "Number of CDSs": "4129",
        "Average Protein Length": "328.8",
        "Coding Ratio (%)": "74.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Massilia forsythiae",
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                "accession": "GCA_012849555.1",
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                "species_taxid": 2728020,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia norwichensis",
                "strain": "strain=LMG 28164",
                "accession": "GCA_024753245.1",
                "taxid": 1442366,
                "species_taxid": 1442366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4096,
                "matched_fragments": 994,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia rhizosphaerae",
                "strain": "strain=NEAU-GH312",
                "accession": "GCA_016093545.1",
                "taxid": 2784389,
                "species_taxid": 2784389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4066,
                "matched_fragments": 990,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia putida",
                "strain": "strain=6NM-7",
                "accession": "GCA_001941825.1",
                "taxid": 1141883,
                "species_taxid": 1141883,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4007,
                "matched_fragments": 1015,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia pinisoli",
                "strain": "strain=JCM 31316",
                "accession": "GCA_024753285.1",
                "taxid": 1772194,
                "species_taxid": 1772194,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.867,
                "matched_fragments": 978,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia niastensis",
                "strain": "strain=DSM 21313",
                "accession": "GCA_000382345.1",
                "taxid": 544911,
                "species_taxid": 544911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8571,
                "matched_fragments": 887,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia alkalitolerans",
                "strain": "strain=DSM 17462",
                "accession": "GCA_000427785.1",
                "taxid": 286638,
                "species_taxid": 286638,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5333,
                "matched_fragments": 907,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia agri",
                "strain": "strain=JCM 31661",
                "accession": "GCA_024753255.1",
                "taxid": 1886785,
                "species_taxid": 1886785,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3053,
                "matched_fragments": 880,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia oculi",
                "strain": "strain=CCUG 43427",
                "accession": "GCA_003143515.1",
                "taxid": 945844,
                "species_taxid": 945844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1786,
                "matched_fragments": 886,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia terrae",
                "strain": "strain=JCM 31606",
                "accession": "GCA_024753145.1",
                "taxid": 1811224,
                "species_taxid": 1811224,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0529,
                "matched_fragments": 835,
                "total_fragments": 1466,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 78.12,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_006715485.1",
                "gtdb_species": "s__Massilia sp006715485",
                "ani": 94.7532,
                "matched_fragments": 1304,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012849555.1",
                "gtdb_species": "s__Massilia sp012849555",
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                "matched_fragments": 1121,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001412595.2",
                "gtdb_species": "s__Massilia sp001412595",
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                "matched_fragments": 997,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.93",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_000745265.1",
                "gtdb_species": "s__Massilia sp000745265",
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                "matched_fragments": 1049,
                "total_fragments": 1466,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001425685.1",
                "gtdb_species": "s__Massilia sp001425685",
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                "matched_fragments": 1022,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000759615.1",
                "gtdb_species": "s__Massilia sp000759615",
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            },
            {
                "accession": "GCA_003520365.1",
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            },
            {
                "accession": "GCF_001941825.1",
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            },
            {
                "accession": "GCF_001426525.1",
                "gtdb_species": "s__Massilia sp001426525",
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                "mean_intra_species_ani": "99.62",
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            },
            {
                "accession": "GCA_003484545.1",
                "gtdb_species": "s__Massilia sp003484545",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.267,
        "cell_length": 0.119,
        "doubling_h": -0.007,
        "growth_tmp": 30.563,
        "optimum_tmp": 30.641,
        "optimum_ph": 6.554,
        "genome_size": 6983573.911,
        "gc_content": 63.546,
        "coding_genes": 5983.195,
        "rRNA16S_genes": 4.699,
        "tRNA_genes": 62.266,
        "gram_stain": 0.0,
        "sporulation": 0.026,
        "motility": 0.693,
        "range_salinity": 0.222,
        "facultative_respiration": 0.072,
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        "aerobic_respiration": 0.895,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.967,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.021,
        "vibrio_cell_shape": 0.01,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Telluria",
        "s__Telluria sp022701635"
    ],
    "_genome_taxon": [
        "Burkholderiaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Telluria",
        "s__Telluria sp022701635",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Telluria",
        "Telluria",
        "sp022701635"
    ],
    "_meo": [
        {
            "id": "MEO_0000379",
            "label": "leaf"
        },
        {
            "id": "MEO_0000419",
            "label": "plant body associated"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}