{ "type": "genome", "identifier": "GCA_022701725.1", "organism": "Pseudomonadaceae bacterium", "title": "Pseudomonadaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Iowa State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022701725.1", "bioproject": "PRJNA800073", "biosample": "SAMN25223859", "wgs_master": "JAKONX000000000.1", "refseq_category": "na", "taxid": "1914538", "species_taxid": "1914538", "organism_name": "Pseudomonadaceae bacterium", "infraspecific_name": "", "isolate": "S28", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2270172v1", "submitter": "Iowa State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/701/725/GCA_022701725.1_ASM2270172v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadaceae bacterium" ], "sample_taxid": [ "1914538" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Hickory Corners, Michigan" ], "sample_host_location_id": [], "data_size": "1.528 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 85.23, "contamination": 4.17, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5391567", "Number of Sequences": "386", "Longest Sequences (bp)": "104525", "N50 (bp)": "20508", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.6", "Number of CDSs": "4440", "Average Protein Length": "322.4", "Coding Ratio (%)": "79.6", "Number of rRNAs": "1", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas syringae pv. coryli", "strain": "strain=NCPPB 4273", "accession": "GCA_000972175.1", "taxid": 317659, "species_taxid": 317659, "relation_to_type": "pathovar", "validated": true, "ani": 95.1562, "matched_fragments": 1462, "total_fragments": 1599, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas syringae pv. coryli", "strain": "strain=ICMP17001", "accession": "GCA_001400235.1", "taxid": 317659, "species_taxid": 317659, "relation_to_type": "pathovar", "validated": true, "ani": 94.798, "matched_fragments": 1139, "total_fragments": 1599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae", "strain": "strain=KCTC 12500", "accession": "GCA_000507185.2", "taxid": 317, "species_taxid": 317, "relation_to_type": "suspected-type", "validated": true, "ani": 94.6402, "matched_fragments": 1468, "total_fragments": 1599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae", "strain": "strain=DSM 10604", "accession": "GCA_000597765.1", "taxid": 317, "species_taxid": 317, "relation_to_type": "suspected-type", "validated": true, "ani": 94.6039, "matched_fragments": 1457, "total_fragments": 1599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae", "strain": "strain=ICMP3023", "accession": "GCA_001401075.1", "taxid": 317, "species_taxid": 317, "relation_to_type": "suspected-type", "validated": true, "ani": 94.591, "matched_fragments": 1431, "total_fragments": 1599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas amygdali", "strain": "strain=DSM 105780", "accession": "GCA_022828345.1", "taxid": 47877, "species_taxid": 47877, "relation_to_type": "pathovar", "validated": true, "ani": 90.0757, "matched_fragments": 1397, "total_fragments": 1599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas amygdali", "strain": "strain=ICMP 3918", "accession": "GCA_002699855.1", "taxid": 47877, "species_taxid": 47877, "relation_to_type": "suspected-type", "validated": true, "ani": 89.9814, "matched_fragments": 1301, "total_fragments": 1599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae group genomosp. 7", "strain": "strain=ICMP 4091", "accession": "GCA_022557255.1", "taxid": 251699, "species_taxid": 251699, "relation_to_type": "pathovar", "validated": true, "ani": 88.6568, "matched_fragments": 1415, "total_fragments": 1599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae group genomosp. 7", "strain": "strain=LMG 5067", "accession": "GCA_022557235.1", "taxid": 251699, "species_taxid": 251699, "relation_to_type": "type", "validated": true, "ani": 88.5631, "matched_fragments": 1390, "total_fragments": 1599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae group genomosp. 3", "strain": "strain=ICMP4116", "accession": "GCA_001401405.1", "taxid": 251701, "species_taxid": 251701, "relation_to_type": "pathovar", "validated": true, "ani": 87.1079, "matched_fragments": 1281, "total_fragments": 1599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae", "strain": "strain=ICMP 9617", "accession": "GCA_000658965.1", "taxid": 317, "species_taxid": 317, "relation_to_type": "pathovar", "validated": true, "ani": 86.9454, "matched_fragments": 1338, "total_fragments": 1599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, 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