{ "type": "genome", "identifier": "GCA_022701845.1", "organism": "Burkholderiaceae bacterium", "title": "Burkholderiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Iowa State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022701845.1", "bioproject": "PRJNA800073", "biosample": "SAMN25223854", "wgs_master": "JAKONS000000000.1", "refseq_category": "na", "taxid": "2030806", "species_taxid": "2030806", "organism_name": "Burkholderiaceae bacterium", "infraspecific_name": "", "isolate": "M94", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2270184v1", "submitter": "Iowa State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/701/845/GCA_022701845.1_ASM2270184v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderiaceae bacterium" ], "sample_taxid": [ "2030806" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Hickory Corners, Michigan" ], "sample_host_location_id": [], "data_size": "0.836 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 44.22, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3075187", "Number of Sequences": "583", "Longest Sequences (bp)": "26254", "N50 (bp)": "5747", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.5", "Number of CDSs": "2289", "Average Protein Length": "309.4", "Coding Ratio (%)": "69.1", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Xylophilus rhododendri", "strain": "strain=KACC 21265", "accession": "GCA_009906855.1", "taxid": 2697032, "species_taxid": 2697032, "relation_to_type": "type", "validated": true, "ani": 84.2607, "matched_fragments": 533, "total_fragments": 733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylophilus ampelinus", "strain": "strain=CECT 7646", "accession": "GCA_003217575.1", "taxid": 54067, "species_taxid": 54067, "relation_to_type": "type", "validated": true, "ani": 81.1686, "matched_fragments": 351, "total_fragments": 733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylophilus ampelinus", "strain": "strain=CFBP 1192", 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862720, "relation_to_type": "type", "validated": true, "ani": 78.9105, "matched_fragments": 343, "total_fragments": 733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter gracilis", "strain": "strain=ATCC BAA-807", "accession": "GCA_000518645.1", "taxid": 230310, "species_taxid": 230310, "relation_to_type": "type", "validated": true, "ani": 78.7926, "matched_fragments": 312, "total_fragments": 733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter humi", "strain": "strain=18x22-1", "accession": "GCA_004681975.1", "taxid": 2530451, "species_taxid": 2530451, "relation_to_type": "type", "validated": true, "ani": 78.7862, "matched_fragments": 307, "total_fragments": 733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter lanceolatus", "strain": "strain=ATCC 14669", "accession": "GCA_000381265.1", "taxid": 86182, "species_taxid": 86182, "relation_to_type": "type", "validated": true, "ani": 78.6147, "matched_fragments": 314, "total_fragments": 733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 78.5596, "matched_fragments": 300, "total_fragments": 733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia beijingensis", "strain": "strain=GCS-AN-3", "accession": "GCA_013423955.1", "taxid": 1207057, "species_taxid": 1207057, "relation_to_type": "type", "validated": true, "ani": 78.4463, "matched_fragments": 282, "total_fragments": 733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diaphorobacter caeni", "strain": "strain=NR2-3-3-1", "accession": "GCA_015354245.1", "taxid": 2784387, "species_taxid": 2784387, "relation_to_type": "type", "validated": true, "ani": 78.3813, "matched_fragments": 214, "total_fragments": 733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 78.3146, "matched_fragments": 241, "total_fragments": 733, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 44.22, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009906855.1", "gtdb_species": "s__Xylophilus rhododendri", "ani": 84.2365, "matched_fragments": 535, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Xylophilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001421705.1", "gtdb_species": 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80.6362, "matched_fragments": 387, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Xylophilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000382045.1", "gtdb_species": "s__Variovorax paradoxus_A", "ani": 79.5982, "matched_fragments": 383, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.57", "min_intra_species_ani": "98.47", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_019233055.1", "gtdb_species": "s__Curvibacter sp019233055", "ani": 78.9059, "matched_fragments": 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"Burkholderiales", "Burkholderiaceae", "Xylophilus", "Xylophilus", "sp022701845" ], "_meo": [ { "id": "MEO_0000379", "label": "leaf" }, { "id": "MEO_0000419", "label": "plant body associated" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }