{ "type": "genome", "identifier": "GCA_022701985.1", "organism": "Actinomycetales bacterium", "title": "Actinomycetales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Iowa State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022701985.1", "bioproject": "PRJNA800073", "biosample": "SAMN25223846", "wgs_master": "JAKONK000000000.1", "refseq_category": "na", "taxid": "1911520", "species_taxid": "1911520", "organism_name": "Actinomycetales bacterium", "infraspecific_name": "", "isolate": "M60", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2270198v1", "submitter": "Iowa State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/701/985/GCA_022701985.1_ASM2270198v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetales bacterium" ], "sample_taxid": [ "1911520" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Hickory Corners, Michigan" ], "sample_host_location_id": [], "data_size": "0.997 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3844481", "Number of Sequences": "289", "Longest Sequences (bp)": "67126", "N50 (bp)": "19756", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "75.7", "Number of CDSs": "3318", "Average Protein Length": "324.8", "Coding Ratio (%)": "84.1", "Number of rRNAs": "0", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Quadrisphaera setariae", "strain": "strain=DD2A", "accession": "GCA_008041935.1", "taxid": 2593304, "species_taxid": 2593304, "relation_to_type": "type", "validated": true, "ani": 84.8234, "matched_fragments": 894, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Quadrisphaera granulorum", "strain": "strain=DSM 44889", "accession": "GCA_900218025.1", "taxid": 317664, "species_taxid": 317664, "relation_to_type": "type", "validated": true, "ani": 83.3533, "matched_fragments": 791, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Quadrisphaera granulorum", "strain": "strain=DSM 44889", "accession": "GCA_003149145.1", "taxid": 317664, "species_taxid": 317664, "relation_to_type": "type", "validated": true, "ani": 83.3456, "matched_fragments": 792, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudokineococcus marinus", "strain": "strain=JCM 14547", "accession": "GCA_013004605.1", "taxid": 351215, "species_taxid": 351215, "relation_to_type": "type", "validated": true, "ani": 78.0313, "matched_fragments": 405, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineococcus indalonis", "strain": "strain=T90", "accession": "GCA_009906395.1", "taxid": 2696566, "species_taxid": 2696566, "relation_to_type": "type", "validated": true, "ani": 77.8248, "matched_fragments": 463, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudokineococcus lusitanus", "strain": "strain=CECT 7306", "accession": "GCA_003751265.1", "taxid": 763993, "species_taxid": 763993, "relation_to_type": "type", "validated": true, "ani": 77.6669, "matched_fragments": 531, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineococcus siccus", "strain": "strain=R8", "accession": "GCA_009906795.1", "taxid": 2696567, "species_taxid": 2696567, "relation_to_type": "type", "validated": true, "ani": 77.4826, "matched_fragments": 480, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus jejuensis", "strain": "strain=NRRL B-24460", "accession": "GCA_000720925.1", "taxid": 367299, "species_taxid": 367299, "relation_to_type": "type", "validated": true, "ani": 77.0683, "matched_fragments": 415, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas timonensis", "strain": "strain=SN7", "accession": "GCA_900046455.1", "taxid": 1689271, "species_taxid": 1689271, "relation_to_type": "type", "validated": true, "ani": 76.9244, "matched_fragments": 332, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas xylanilytica", "strain": "strain=NBRC 101102", "accession": "GCA_007989805.1", "taxid": 233583, "species_taxid": 233583, "relation_to_type": "type", "validated": true, "ani": 76.9238, "matched_fragments": 372, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 76.8928, "matched_fragments": 289, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 76.7905, "matched_fragments": 317, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=DSM 20118", "accession": "GCA_000767135.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 76.7748, "matched_fragments": 365, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=NBRC 3753", "accession": "GCA_006538745.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 76.7477, "matched_fragments": 432, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": "strain=Sa4CUA1", "accession": "GCA_014836555.1", "taxid": 2762237, "species_taxid": 2762237, "relation_to_type": "type", "validated": true, "ani": 76.73, "matched_fragments": 336, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 76.6744, "matched_fragments": 321, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus pulveris", "strain": "strain=DSM 46839", "accession": "GCA_900188375.1", "taxid": 1564159, "species_taxid": 1564159, "relation_to_type": "type", "validated": true, "ani": 76.6494, "matched_fragments": 467, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter caceresii", "strain": "strain=KNN 45-2b", "accession": "GCA_000761485.1", "taxid": 1522368, "species_taxid": 1522368, "relation_to_type": "type", "validated": true, "ani": 76.616, "matched_fragments": 422, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora sitophila", "strain": "strain=NEAU-D428", "accession": "GCA_014892245.1", "taxid": 2771537, "species_taxid": 2771537, "relation_to_type": "type", "validated": true, "ani": 75.9018, "matched_fragments": 445, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015390235.1", "gtdb_species": "s__Quadrisphaera sp015390235", "ani": 91.6016, "matched_fragments": 991, "total_fragments": 1137, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Quadrisphaeraceae;g__Quadrisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008041935.1", "gtdb_species": "s__Quadrisphaera sp008041935", "ani": 84.7766, 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