{ "type": "genome", "identifier": "GCA_022702045.1", "organism": "Spirosomaceae bacterium", "title": "Spirosomaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Iowa State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022702045.1", "bioproject": "PRJNA800073", "biosample": "SAMN25223843", "wgs_master": "JAKONH000000000.1", "refseq_category": "na", "taxid": "2902720", "species_taxid": "2902720", "organism_name": "Spirosomaceae bacterium", "infraspecific_name": "", "isolate": "M47", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2270204v1", "submitter": "Iowa State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/702/045/GCA_022702045.1_ASM2270204v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosomaceae bacterium" ], "sample_taxid": [ "2902720" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Hickory Corners, Michigan" ], "sample_host_location_id": [], "data_size": "1.537 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.27, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5342470", "Number of Sequences": "646", "Longest Sequences (bp)": "48992", "N50 (bp)": "10625", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.3", "Number of CDSs": "3877", "Average Protein Length": "329.8", "Coding Ratio (%)": "71.8", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma oryzae", "strain": "strain=DSM 28354", "accession": "GCA_003002825.1", "taxid": 1469603, "species_taxid": 1469603, "relation_to_type": "type", "validated": true, "ani": 87.0621, "matched_fragments": 1250, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma taeanense", "strain": "strain=TS118", "accession": "GCA_013127955.1", "taxid": 2735870, "species_taxid": 2735870, "relation_to_type": "type", "validated": true, "ani": 76.5998, "matched_fragments": 219, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma lacussanchae", "strain": "strain=CPCC 100624", "accession": "GCA_005870035.1", "taxid": 1884249, "species_taxid": 1884249, "relation_to_type": "type", "validated": true, "ani": 76.5245, "matched_fragments": 252, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma sordidisoli", "strain": "strain=TY50", "accession": "GCA_004138325.1", "taxid": 2502893, "species_taxid": 2502893, "relation_to_type": "type", "validated": true, "ani": 76.5197, "matched_fragments": 260, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma agri", "strain": "strain=KCTC 52727", "accession": "GCA_010747415.1", "taxid": 1987381, "species_taxid": 1987381, "relation_to_type": "type", "validated": true, "ani": 76.5174, "matched_fragments": 237, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma rigui", "strain": "strain=KCTC 12531", "accession": "GCA_002067135.1", "taxid": 564064, "species_taxid": 564064, "relation_to_type": "type", "validated": true, "ani": 76.5075, "matched_fragments": 223, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma panaciterrae", "strain": "strain=DSM 21099", "accession": "GCA_000374025.1", "taxid": 496058, "species_taxid": 496058, "relation_to_type": "type", "validated": true, "ani": 76.4196, "matched_fragments": 186, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrisoma limi", "strain": "strain=BUZ 3", "accession": "GCA_000296815.2", "taxid": 663275, "species_taxid": 663275, "relation_to_type": "type", "validated": true, "ani": 76.3295, "matched_fragments": 194, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma radiotolerans", "strain": "strain=DG5A", "accession": "GCA_000974425.1", "taxid": 1379870, "species_taxid": 1379870, "relation_to_type": "type", "validated": true, "ani": 76.3155, 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95, "status": "below_threshold" } ], "cc_result": { "completeness": 62.27, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003002825.1", "gtdb_species": "s__Spirosoma oryzae", "ani": 87.0721, "matched_fragments": 1249, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012849055.1", "gtdb_species": "s__Spirosoma sp012849055", "ani": 80.8779, "matched_fragments": 977, "total_fragments": 1459, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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