{
    "type": "genome",
    "identifier": "GCA_022703215.1",
    "organism": "Spirochaetota bacterium",
    "title": "Spirochaetota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Illinois at Urbana-Champaign",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022703215.1",
        "bioproject": "PRJNA797519",
        "biosample": "SAMN25008169",
        "wgs_master": "JAKLEE000000000.1",
        "refseq_category": "na",
        "taxid": "2202144",
        "species_taxid": "2202144",
        "organism_name": "Spirochaetota bacterium",
        "infraspecific_name": "",
        "isolate": "RA.bin126",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2270321v1",
        "submitter": "University of Illinois at Urbana-Champaign",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/703/215/GCA_022703215.1_ASM2270321v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Spirochaetota bacterium"
        ],
        "sample_taxid": [
            "2202144"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Rantoul"
        ],
        "sample_host_location_id": [],
        "data_size": "0.813 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 90.74,
        "contamination": 8.9,
        "strain_heterogeneity": 16.67,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2971138",
        "Number of Sequences": "533",
        "Longest Sequences (bp)": "41563",
        "N50 (bp)": "10061",
        "Gap Ratio (%)": "0.002154",
        "GCcontent (%)": "68.9",
        "Number of CDSs": "2276",
        "Average Protein Length": "318.7",
        "Coding Ratio (%)": "73.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Azospirillum rugosum",
                "strain": "strain=IMMIB AFH-6",
                "accession": "GCA_017876155.1",
                "taxid": 416170,
                "species_taxid": 416170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9404,
                "matched_fragments": 65,
                "total_fragments": 745,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Inmirania thermothiophila",
                "strain": "strain=DSM 100275",
                "accession": "GCA_003751635.1",
                "taxid": 1750597,
                "species_taxid": 1750597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9286,
                "matched_fragments": 64,
                "total_fragments": 745,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubellimicrobium mesophilum",
                "strain": "strain=DSM 19309",
                "accession": "GCA_000600335.2",
                "taxid": 1123067,
                "species_taxid": 1123067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9215,
                "matched_fragments": 62,
                "total_fragments": 745,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium dankookense",
                "strain": "strain=DSM 22415",
                "accession": "GCA_022179165.1",
                "taxid": 560405,
                "species_taxid": 560405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9074,
                "matched_fragments": 86,
                "total_fragments": 745,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium dankookense",
                "strain": "strain=SW08-7",
                "accession": "GCA_902141855.1",
                "taxid": 560405,
                "species_taxid": 560405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8851,
                "matched_fragments": 92,
                "total_fragments": 745,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas indica",
                "strain": "strain=PPL560",
                "accession": "GCA_022669045.1",
                "taxid": 2912242,
                "species_taxid": 2912242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8359,
                "matched_fragments": 59,
                "total_fragments": 745,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acuticoccus yangtzensis",
                "strain": "strain=JL1095",
                "accession": "GCA_001927245.1",
                "taxid": 1443441,
                "species_taxid": 1443441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7388,
                "matched_fragments": 62,
                "total_fragments": 745,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acuticoccus yangtzensis",
                "strain": "strain=JL1095",
                "accession": "GCA_003073145.1",
                "taxid": 1443441,
                "species_taxid": 1443441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7344,
                "matched_fragments": 63,
                "total_fragments": 745,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 90.74,
            "contamination": 8.9,
            "strain_heterogeneity": 16.67
        },
        "gtdb_result": [
            {
                "accession": "GCA_018262985.1",
                "gtdb_species": "s__JAFGNN01 sp018262985",
                "ani": 91.0131,
                "matched_fragments": 673,
                "total_fragments": 745,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA12059;g__JAFGNN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.32",
                "min_intra_species_ani": "98.32",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016926955.1",
                "gtdb_species": "s__JAFGNN01 sp016926955",
                "ani": 88.2252,
                "matched_fragments": 625,
                "total_fragments": 745,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA12059;g__JAFGNN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016794765.1",
                "gtdb_species": "s__JAEUJG01 sp016794765",
                "ani": 78.353,
                "matched_fragments": 199,
                "total_fragments": 745,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA8932;g__JAEUJG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003247225.1",
                "gtdb_species": "s__SZUA-370 sp003247225",
                "ani": 77.9783,
                "matched_fragments": 207,
                "total_fragments": 745,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA12059;g__SZUA-370",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003245635.1",
                "gtdb_species": "s__SZUA-426 sp003245635",
                "ani": 77.4687,
                "matched_fragments": 67,
                "total_fragments": 745,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Termitinemataceae;g__SZUA-426",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002839315.1",
                "gtdb_species": "s__SZUA-370 sp002839315",
                "ani": 77.3311,
                "matched_fragments": 143,
                "total_fragments": 745,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA12059;g__SZUA-370",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002307245.1",
                "gtdb_species": "s__UBA1306 sp002307245",
                "ani": 77.2723,
                "matched_fragments": 141,
                "total_fragments": 745,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA8932;g__UBA1306",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903821875.1",
                "gtdb_species": "s__CAIJMU01 sp903821875",
                "ani": 77.2627,
                "matched_fragments": 95,
                "total_fragments": 745,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA8932;g__CAIJMU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.44",
                "min_intra_species_ani": "98.70",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_012517645.1",
                "gtdb_species": "s__JAAYUR01 sp012517645",
                "ani": 77.0809,
                "matched_fragments": 101,
                "total_fragments": 745,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA12059;g__JAAYUR01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004525355.1",
                "gtdb_species": "s__UBA5200 sp004525355",
                "ani": 76.747,
                "matched_fragments": 58,
                "total_fragments": 745,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__UBA12059;g__UBA5200",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016934415.1",
                "gtdb_species": "s__JAFGSW01 sp016934415",
                "ani": 75.9494,
                "matched_fragments": 52,
                "total_fragments": 745,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__SZUA-6;f__RPPD01;g__JAFGSW01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Spirochaetia",
        "o__Treponematales",
        "f__UBA12059",
        "g__JAFGNN01",
        "s__JAFGNN01 sp022703215"
    ],
    "_genome_taxon": [
        "Spirochaetota",
        "bacterium",
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Spirochaetia",
        "o__Treponematales",
        "f__UBA12059",
        "g__JAFGNN01",
        "s__JAFGNN01 sp022703215",
        "Bacteria",
        "Spirochaetota",
        "Spirochaetia",
        "Treponematales",
        "UBA12059",
        "JAFGNN01",
        "JAFGNN01",
        "sp022703215"
    ],
    "_meo": [
        {
            "id": "MEO_0001192",
            "label": "anaerobic digester"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}