{
    "type": "genome",
    "identifier": "GCA_022708545.1",
    "organism": "Bacteroidota bacterium",
    "title": "Bacteroidota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Illinois at Urbana-Champaign",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022708545.1",
        "bioproject": "PRJNA797469",
        "biosample": "SAMN25010505",
        "wgs_master": "JAKIYL000000000.1",
        "refseq_category": "na",
        "taxid": "1898104",
        "species_taxid": "1898104",
        "organism_name": "Bacteroidota bacterium",
        "infraspecific_name": "",
        "isolate": "UR.bin129",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2270854v1",
        "submitter": "University of Illinois at Urbana-Champaign",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/708/545/GCA_022708545.1_ASM2270854v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroidota bacterium"
        ],
        "sample_taxid": [
            "1898104"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Urbana"
        ],
        "sample_host_location_id": [],
        "data_size": "0.713 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 81.25,
        "contamination": 8.68,
        "strain_heterogeneity": 14.29,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2482802",
        "Number of Sequences": "298",
        "Longest Sequences (bp)": "82739",
        "N50 (bp)": "25582",
        "Gap Ratio (%)": "0.327130",
        "GCcontent (%)": "42.0",
        "Number of CDSs": "1863",
        "Average Protein Length": "343.7",
        "Coding Ratio (%)": "77.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Seramator thermalis",
                "strain": "strain=SYSU GA16112",
                "accession": "GCA_004138125.1",
                "taxid": 2496270,
                "species_taxid": 2496270,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 631,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Petrimonas mucosa",
                "strain": "strain=ING2-E5A",
                "accession": "GCA_900095795.1",
                "taxid": 1642646,
                "species_taxid": 1642646,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6595,
                "matched_fragments": 64,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Proteiniphilum saccharofermentans",
                "strain": "strain=M3/6",
                "accession": "GCA_900095135.1",
                "taxid": 1642647,
                "species_taxid": 1642647,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2951,
                "matched_fragments": 67,
                "total_fragments": 717,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 81.25,
            "contamination": 8.68,
            "strain_heterogeneity": 14.29
        },
        "gtdb_result": [
            {
                "accession": "GCA_002849245.1",
                "gtdb_species": "s__UBA4179 sp002849245",
                "ani": 95.1682,
                "matched_fragments": 624,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__UBA4179",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.42",
                "min_intra_species_ani": "95.13",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002381125.1",
                "gtdb_species": "s__UBA4179 sp002381125",
                "ani": 79.3383,
                "matched_fragments": 104,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__UBA4179",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.91",
                "min_intra_species_ani": "96.44",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_012798745.1",
                "gtdb_species": "s__UBA4179 sp012798745",
                "ani": 76.8374,
                "matched_fragments": 56,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__UBA4179",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002316835.1",
                "gtdb_species": "s__Petrimonas sp002316835",
                "ani": 76.6652,
                "matched_fragments": 64,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Petrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900095795.1",
                "gtdb_species": "s__Petrimonas mucosa",
                "ani": 76.6573,
                "matched_fragments": 65,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Petrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "99.34",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002383605.1",
                "gtdb_species": "s__Proteiniphilum sp002383605",
                "ani": 76.6174,
                "matched_fragments": 73,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.07",
                "min_intra_species_ani": "99.07",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001768325.1",
                "gtdb_species": "s__Proteiniphilum sp001768325",
                "ani": 76.5016,
                "matched_fragments": 77,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.21",
                "min_intra_species_ani": "95.58",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_900095135.1",
                "gtdb_species": "s__Proteiniphilum saccharofermentans",
                "ani": 76.3098,
                "matched_fragments": 68,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.87",
                "min_intra_species_ani": "96.82",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002069095.1",
                "gtdb_species": "s__Petrimonas sp002069095",
                "ani": 76.1011,
                "matched_fragments": 55,
                "total_fragments": 717,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Petrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Dysgonomonadaceae",
        "g__Seramator",
        "s__Seramator thermalis"
    ],
    "_genome_taxon": [
        "Bacteroidota",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Dysgonomonadaceae",
        "g__Seramator",
        "s__Seramator thermalis",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Dysgonomonadaceae",
        "Seramator",
        "Seramator",
        "thermalis"
    ],
    "_meo": [
        {
            "id": "MEO_0001192",
            "label": "anaerobic digester"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}