{
    "type": "genome",
    "identifier": "GCA_022709645.1",
    "organism": "Verrucomicrobiota bacterium",
    "title": "Verrucomicrobiota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Illinois at Urbana-Champaign",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022709645.1",
        "bioproject": "PRJNA797519",
        "biosample": "SAMN25008279",
        "wgs_master": "JAKLIK000000000.1",
        "refseq_category": "na",
        "taxid": "2026799",
        "species_taxid": "2026799",
        "organism_name": "Verrucomicrobiota bacterium",
        "infraspecific_name": "",
        "isolate": "RA.bin85",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2270964v1",
        "submitter": "University of Illinois at Urbana-Champaign",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/709/645/GCA_022709645.1_ASM2270964v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Verrucomicrobiota bacterium"
        ],
        "sample_taxid": [
            "2026799"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Rantoul"
        ],
        "sample_host_location_id": [],
        "data_size": "0.804 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 70.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2828013",
        "Number of Sequences": "189",
        "Longest Sequences (bp)": "333230",
        "N50 (bp)": "125925",
        "Gap Ratio (%)": "0.007001",
        "GCcontent (%)": "61.8",
        "Number of CDSs": "2025",
        "Average Protein Length": "389.4",
        "Coding Ratio (%)": "83.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "19",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 70.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903912925.1",
                "gtdb_species": "s__PALSA-1440 sp903912925",
                "ani": 77.9113,
                "matched_fragments": 245,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA8199;g__PALSA-1440",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012517205.1",
                "gtdb_species": "s__UBA8199 sp003527065",
                "ani": 77.8654,
                "matched_fragments": 217,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA8199;g__UBA8199",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.50",
                "min_intra_species_ani": "99.40",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_003152225.1",
                "gtdb_species": "s__PALSA-1440 sp003152225",
                "ani": 77.8148,
                "matched_fragments": 279,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA8199;g__PALSA-1440",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903873945.1",
                "gtdb_species": "s__CAIQQM01 sp903873945",
                "ani": 76.6451,
                "matched_fragments": 69,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA8199;g__CAIQQM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003159675.1",
                "gtdb_species": "s__BOG-1460 sp003159675",
                "ani": 76.4157,
                "matched_fragments": 66,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA3939;g__BOG-1460",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003218515.1",
                "gtdb_species": "s__AV2 sp003218515",
                "ani": 76.1358,
                "matched_fragments": 56,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__AV2;g__AV2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002385705.1",
                "gtdb_species": "s__UBA3939 sp002385705",
                "ani": 76.0037,
                "matched_fragments": 65,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA3939;g__UBA3939",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016871715.1",
                "gtdb_species": "s__VHCO01 sp016871715",
                "ani": 75.9593,
                "matched_fragments": 55,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__J093;g__VHCO01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Limisphaerales",
        "f__UBA8199",
        "g__UBA8199",
        "s__"
    ],
    "_genome_taxon": [
        "Verrucomicrobiota",
        "bacterium",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Limisphaerales",
        "f__UBA8199",
        "g__UBA8199",
        "s__",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Limisphaerales",
        "UBA8199",
        "UBA8199",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0001192",
            "label": "anaerobic digester"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}