{ "type": "genome", "identifier": "GCA_022712095.1", "organism": "Chryseobacterium sp.", "title": "Chryseobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "The University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022712095.1", "bioproject": "PRJNA801070", "biosample": "SAMN26087357", "wgs_master": "JALAHD000000000.1", "refseq_category": "na", "taxid": "1871047", "species_taxid": "1871047", "organism_name": "Chryseobacterium sp.", "infraspecific_name": "", "isolate": "feces_ps_bin.7", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2271209v1", "submitter": "The University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/712/095/GCA_022712095.1_ASM2271209v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium sp." ], "sample_taxid": [ "1871047" ], "sample_host_organism": [ "Zophobas morio" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.994 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3527001", "Number of Sequences": "324", "Longest Sequences (bp)": "59889", "N50 (bp)": "15239", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.3", "Number of CDSs": "3020", "Average Protein Length": "332.7", "Coding Ratio (%)": "85.5", "Number of rRNAs": "1", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium candidae", "strain": "strain=JC507", "accession": "GCA_004916905.1", "taxid": 1978493, "species_taxid": 1978493, "relation_to_type": "type", "validated": true, "ani": 79.6183, "matched_fragments": 503, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lathyri", "strain": "strain=NBRC 105250", "accession": "GCA_007991435.1", "taxid": 395933, "species_taxid": 395933, "relation_to_type": "type", "validated": true, "ani": 79.5941, "matched_fragments": 467, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lathyri", "strain": "strain=KCTC 22544", "accession": "GCA_003290185.1", "taxid": 395933, "species_taxid": 395933, "relation_to_type": "type", "validated": true, "ani": 79.5513, "matched_fragments": 471, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium defluvii", "strain": "strain=DSM 14219", "accession": "GCA_003634775.1", "taxid": 160396, "species_taxid": 160396, "relation_to_type": "type", "validated": true, "ani": 79.4756, "matched_fragments": 467, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium populi", "strain": "strain=CF314", "accession": "GCA_000282115.1", "taxid": 1144316, "species_taxid": 1144316, "relation_to_type": "type", "validated": true, "ani": 79.3783, "matched_fragments": 499, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium daecheongense", "strain": "strain=DSM 15235", "accession": "GCA_004365465.1", "taxid": 192389, "species_taxid": 192389, "relation_to_type": "type", "validated": true, "ani": 79.3225, "matched_fragments": 494, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium daecheongense", "strain": "strain=DSM 15235", "accession": "GCA_003729955.1", "taxid": 192389, "species_taxid": 192389, "relation_to_type": "type", "validated": true, "ani": 79.3157, "matched_fragments": 488, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizoplanae", "strain": "strain=DSM 29371", "accession": "GCA_900182655.1", "taxid": 1609531, "species_taxid": 1609531, "relation_to_type": "type", "validated": true, "ani": 79.1476, "matched_fragments": 490, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium panacisoli", "strain": "strain=Gsoil 183", "accession": "GCA_008274625.1", "taxid": 1807141, "species_taxid": 1807141, "relation_to_type": "type", "validated": true, "ani": 79.1293, "matched_fragments": 507, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium cucumeris", "strain": "strain=GSE06", "accession": "GCA_001593385.1", "taxid": 1813611, "species_taxid": 1813611, "relation_to_type": "type", "validated": true, "ani": 79.0652, "matched_fragments": 515, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gallinarum", "strain": "strain=DSM 27622", "accession": "GCA_001021975.1", "taxid": 1324352, "species_taxid": 1324352, "relation_to_type": "type", "validated": true, "ani": 79.0624, "matched_fragments": 478, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 79.057, "matched_fragments": 451, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oncorhynchi", "strain": "strain=701B-08", "accession": "GCA_002899895.2", "taxid": 741074, "species_taxid": 741074, "relation_to_type": "type", "validated": true, "ani": 79.0564, "matched_fragments": 466, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizosphaerae", "strain": "strain=NBRC 105248", "accession": "GCA_007991415.1", "taxid": 395937, "species_taxid": 395937, "relation_to_type": "type", "validated": true, "ani": 79.0146, "matched_fragments": 472, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizosphaerae", "strain": "strain=KCTC 22548", "accession": "GCA_003385455.1", "taxid": 395937, "species_taxid": 395937, "relation_to_type": "type", "validated": true, "ani": 78.974, "matched_fragments": 476, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 78.9131, "matched_fragments": 478, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oleae", "strain": "strain=DSM 25575", "accession": "GCA_900115055.1", "taxid": 491207, "species_taxid": 491207, "relation_to_type": "type", "validated": true, "ani": 78.8861, "matched_fragments": 447, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium polytrichastri", "strain": "strain=DSM 26899", "accession": "GCA_900142445.1", "taxid": 1302687, "species_taxid": 1302687, "relation_to_type": "type", "validated": true, "ani": 78.876, "matched_fragments": 485, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium limigenitum", "strain": "strain=SUR2", "accession": "GCA_900114875.1", "taxid": 1612149, "species_taxid": 1612149, "relation_to_type": "type", "validated": true, "ani": 78.8729, "matched_fragments": 509, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium lactis", "strain": "strain=NCTC11390", "accession": "GCA_002899875.1", "taxid": 1241981, "species_taxid": 1241981, "relation_to_type": "type", "validated": true, "ani": 78.8316, "matched_fragments": 486, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium glaciei", "strain": "strain=IHBB 10212", "accession": "GCA_001648155.1", "taxid": 1685010, "species_taxid": 1685010, "relation_to_type": "type", "validated": true, "ani": 78.7868, "matched_fragments": 483, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium geocarposphaerae", "strain": "strain=DSM 27617", "accession": "GCA_002797535.1", "taxid": 1416776, "species_taxid": 1416776, "relation_to_type": "type", "validated": true, "ani": 78.7749, "matched_fragments": 453, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 78.6051, "matched_fragments": 390, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 78.5408, "matched_fragments": 452, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 78.5271, "matched_fragments": 376, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003385515.1", "gtdb_species": "s__Chryseobacterium sp003385515", "ani": 79.7039, "matched_fragments": 507, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.92", "min_intra_species_ani": "97.92", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004916905.1", "gtdb_species": "s__Chryseobacterium candidae", "ani": 79.6355, "matched_fragments": 500, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.64", "min_intra_species_ani": "98.56", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003290185.1", "gtdb_species": "s__Chryseobacterium lathyri", "ani": 79.5761, "matched_fragments": 467, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003634775.1", "gtdb_species": "s__Chryseobacterium defluvii", "ani": 79.4794, "matched_fragments": 465, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000282115.1", "gtdb_species": "s__Chryseobacterium populi", "ani": 79.3675, "matched_fragments": 498, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003729955.1", "gtdb_species": "s__Chryseobacterium daecheongense", "ani": 79.3032, "matched_fragments": 488, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019236175.1", "gtdb_species": "s__Chryseobacterium sp019236175", "ani": 79.2417, "matched_fragments": 496, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002979755.1", "gtdb_species": "s__Chryseobacterium culicis_A", "ani": 79.1617, "matched_fragments": 493, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.05", "min_intra_species_ani": "96.10", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002025665.1", "gtdb_species": "s__Chryseobacterium indologenes_F", "ani": 79.161, "matched_fragments": 500, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000745535.1", "gtdb_species": "s__Chryseobacterium sp000745535", "ani": 79.1478, "matched_fragments": 505, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003663845.1", "gtdb_species": "s__Chryseobacterium sp003663845", "ani": 79.1245, "matched_fragments": 520, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000799455.1", "gtdb_species": "s__Chryseobacterium sp000799455", "ani": 79.1219, "matched_fragments": 440, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004119445.1", "gtdb_species": "s__Chryseobacterium sp004119445", "ani": 79.1158, "matched_fragments": 497, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002899895.1", "gtdb_species": "s__Chryseobacterium oncorhynchi", "ani": 79.0768, "matched_fragments": 463, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003729935.1", "gtdb_species": "s__Chryseobacterium sp003729935", "ani": 79.0734, "matched_fragments": 483, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013410675.1", "gtdb_species": "s__Chryseobacterium sp013410675", "ani": 79.0718, "matched_fragments": 527, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000799375.1", "gtdb_species": "s__Chryseobacterium aquifrigidense", "ani": 79.0637, "matched_fragments": 517, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.62", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001045455.1", "gtdb_species": "s__Chryseobacterium sp001045455", "ani": 79.0261, "matched_fragments": 455, "total_fragments": 1024, "gtdb_taxonomy": 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