{ "type": "genome", "identifier": "GCA_022712375.1", "organism": "Enterobacteriaceae bacterium", "title": "Enterobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022712375.1", "bioproject": "PRJNA801070", "biosample": "SAMN26087337", "wgs_master": "JALAGQ000000000.1", "refseq_category": "na", "taxid": "1849603", "species_taxid": "1849603", "organism_name": "Enterobacteriaceae bacterium", "infraspecific_name": "", "isolate": "feces_b_bin.9", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2271237v1", "submitter": "The University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/712/375/GCA_022712375.1_ASM2271237v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterobacteriaceae bacterium" ], "sample_taxid": [ "1849603" ], "sample_host_organism": [ "Zophobas morio" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.077 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3780447", "Number of Sequences": "114", "Longest Sequences (bp)": "196815", "N50 (bp)": "51325", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.6", "Number of CDSs": "3426", "Average Protein Length": "319.2", "Coding Ratio (%)": "86.8", "Number of rRNAs": "1", "Number of tRNAs": "51", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cronobacter malonaticus", "strain": "strain=LMG 23826", "accession": "GCA_001277215.2", "taxid": 413503, "species_taxid": 413503, "relation_to_type": "type", "validated": true, "ani": 79.788, "matched_fragments": 502, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter dublinensis subsp. lactaridi", "strain": "strain=LMG 23825", "accession": "GCA_000409345.1", "taxid": 413499, "species_taxid": 413497, "relation_to_type": "type", "validated": true, "ani": 79.7689, "matched_fragments": 505, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter malonaticus", "strain": "strain=LMG 23826", "accession": "GCA_000409305.1", "taxid": 413503, "species_taxid": 413503, "relation_to_type": "type", "validated": true, "ani": 79.7686, "matched_fragments": 499, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter dublinensis subsp. lausannensis", "strain": "strain=LMG 23824", "accession": "GCA_000409365.1", "taxid": 413500, "species_taxid": 413497, "relation_to_type": "type", "validated": true, "ani": 79.7441, "matched_fragments": 494, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_001971035.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 79.6279, "matched_fragments": 460, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=PartO-Kpneumoniae-RM8376", "accession": "GCA_022869665.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 79.6268, "matched_fragments": 507, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccibacter turicensis", "strain": "strain=LMG 23730", "accession": "GCA_000463155.2", "taxid": 357233, "species_taxid": 357233, "relation_to_type": "type", "validated": true, "ani": 79.6242, "matched_fragments": 482, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter dublinensis subsp. dublinensis", "strain": "strain=LMG 23823", "accession": "GCA_000409225.1", "taxid": 413498, "species_taxid": 413497, "relation_to_type": "type", "validated": true, "ani": 79.6203, "matched_fragments": 513, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter dublinensis subsp. dublinensis", "strain": "strain=LMG 23823", "accession": "GCA_001277235.1", "taxid": 413498, "species_taxid": 413497, "relation_to_type": "type", "validated": true, "ani": 79.5971, "matched_fragments": 516, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter muytjensii", "strain": "strain=ATCC 51329", "accession": "GCA_000409285.1", "taxid": 413501, "species_taxid": 413501, "relation_to_type": "type", "validated": true, "ani": 79.5819, "matched_fragments": 507, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccibacter colletis", "strain": "strain=1383", "accession": "GCA_000696575.1", "taxid": 1505757, "species_taxid": 1505757, "relation_to_type": "type", "validated": true, "ani": 79.579, "matched_fragments": 495, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae subsp. pneumoniae", "strain": "strain=NBRC 14940", "accession": "GCA_001590945.1", "taxid": 72407, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 79.5681, "matched_fragments": 498, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae subsp. pneumoniae", "strain": "strain=DSM 30104", "accession": "GCA_000281755.1", "taxid": 72407, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 79.5493, "matched_fragments": 511, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Franconibacter daqui", "strain": "strain=CGMCC 1.15944", "accession": "GCA_014644275.1", "taxid": 2047724, "species_taxid": 2047724, "relation_to_type": "type", "validated": true, "ani": 79.5472, "matched_fragments": 482, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=ATCC 13883", "accession": "GCA_000742135.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 79.5427, "matched_fragments": 507, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_015965555.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 79.5066, "matched_fragments": 487, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=FDAARGOS_775", "accession": "GCA_006364295.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 79.5038, "matched_fragments": 510, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae subsp. rhinoscleromatis", "strain": "strain=ATCC 13884", "accession": "GCA_000163455.1", "taxid": 39831, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 79.4573, "matched_fragments": 499, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2485, "matched_fragments": 473, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 79.2034, "matched_fragments": 464, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_021469225.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 79.1807, "matched_fragments": 468, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter amalonaticus", "strain": "strain=FDAARGOS_1489", "accession": "GCA_020099335.1", "taxid": 35703, "species_taxid": 35703, "relation_to_type": "type", "validated": true, "ani": 79.0282, "matched_fragments": 412, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter amalonaticus", "strain": "strain=JCM 1661", "accession": "GCA_018323885.1", "taxid": 35703, "species_taxid": 35703, "relation_to_type": "type", "validated": true, "ani": 78.9743, "matched_fragments": 429, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mixta gaviniae", "strain": "strain=DSM 22758", "accession": "GCA_002953195.1", "taxid": 665914, "species_taxid": 665914, "relation_to_type": "type", "validated": true, "ani": 78.437, "matched_fragments": 410, "total_fragments": 1201, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 62.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005671395.1", "gtdb_species": "s__Jejubacter calystegiae", "ani": 95.8496, "matched_fragments": 1086, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Jejubacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001277215.2", "gtdb_species": "s__Cronobacter malonaticus", "ani": 79.7884, "matched_fragments": 502, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.11", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 62, "status": "-" }, { "accession": "GCF_009907385.1", "gtdb_species": "s__Atlantibacter hermannii_A", "ani": 79.684, "matched_fragments": 477, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Atlantibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000302695.1", "gtdb_species": "s__Jejubacter sp000302695", "ani": 79.678, "matched_fragments": 508, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Jejubacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001277195.1", "gtdb_species": "s__Cronobacter muytjensii", "ani": 79.6763, "matched_fragments": 503, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.13", "min_intra_species_ani": "98.83", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_000982825.1", "gtdb_species": "s__Cronobacter sakazakii", "ani": 79.6654, "matched_fragments": 491, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.00", "min_intra_species_ani": "97.39", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.86", "num_clustered_genomes": 440, "status": "-" }, { "accession": "GCF_000463155.2", "gtdb_species": "s__Siccibacter turicensis", "ani": 79.6453, "matched_fragments": 479, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Siccibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "97.87", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_001277235.1", "gtdb_species": "s__Cronobacter dublinensis", "ani": 79.6121, "matched_fragments": 513, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Cronobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.74", "min_intra_species_ani": "96.92", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 42, "status": "-" }, { "accession": "GCF_000696575.1", "gtdb_species": "s__Siccibacter colletis", "ani": 79.5849, "matched_fragments": 494, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Siccibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014193285.1", "gtdb_species": "s__Atlantibacter sp002345315", "ani": 79.5694, "matched_fragments": 505, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Atlantibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.54", "min_intra_species_ani": "98.53", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000742135.1", "gtdb_species": "s__Klebsiella pneumoniae", "ani": 79.5513, "matched_fragments": 507, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.216, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "95.97", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.77", "num_clustered_genomes": 11294, "status": "-" }, { "accession": "GCF_000164865.1", "gtdb_species": "s__Enterobacter_B lignolyticus", "ani": 79.539, "matched_fragments": 486, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.80", "min_intra_species_ani": "98.80", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007570865.1", "gtdb_species": "s__Atlantibacter subterranea", "ani": 79.5351, "matched_fragments": 501, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Atlantibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "98.44", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_010092695.1", "gtdb_species": "s__Jejubacter sp010092695", "ani": 79.5199, "matched_fragments": 536, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Jejubacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001484765.1", "gtdb_species": "s__Erwinia_A teleogrylli", "ani": 79.505, "matched_fragments": 516, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Erwinia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000759815.1", "gtdb_species": "s__Citrobacter_A rodentium", "ani": 79.4756, "matched_fragments": 493, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_002211745.1", "gtdb_species": "s__Kluyvera georgiana_A", "ani": 79.4711, "matched_fragments": 484, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.12", "min_intra_species_ani": "98.12", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002480085.1", "gtdb_species": "s__Pseudescherichia sp002480085", "ani": 79.4302, "matched_fragments": 465, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pseudescherichia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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"N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018323885.1", "gtdb_species": "s__Citrobacter_A amalonaticus", "ani": 78.9848, "matched_fragments": 428, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.67", "min_intra_species_ani": "95.02", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 59, "status": "-" }, { "accession": "GCF_000759835.1", "gtdb_species": "s__Citrobacter_A sedlakii", "ani": 78.9567, "matched_fragments": 458, "total_fragments": 1201, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "99.00", "mean_intra_species_af": "0.95", 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