{ "type": "genome", "identifier": "GCA_022712855.1", "organism": "Pseudodesulfovibrio sp.", "title": "Pseudodesulfovibrio sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Nanyang Technological University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022712855.1", "bioproject": "PRJNA693108", "biosample": "SAMN17386794", "wgs_master": "JAFLJT000000000.1", "refseq_category": "na", "taxid": "2035812", "species_taxid": "2035812", "organism_name": "Pseudodesulfovibrio sp.", "infraspecific_name": "", "isolate": "MC-06", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2271285v1", "submitter": "Nanyang Technological University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/712/855/GCA_022712855.1_ASM2271285v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudodesulfovibrio sp." ], "sample_taxid": [ "2035812" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "1.107 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.29, "contamination": 9.9, "strain_heterogeneity": 40.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3845554", "Number of Sequences": "369", "Longest Sequences (bp)": "85398", "N50 (bp)": "13721", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.8", "Number of CDSs": "3289", "Average Protein Length": "307.1", "Coding Ratio (%)": "78.8", "Number of rRNAs": "1", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudodesulfovibrio sediminis", "strain": "strain=SF6", "accession": "GCA_020886695.1", "taxid": 2810563, "species_taxid": 2810563, "relation_to_type": "type", "validated": true, "ani": 78.206, "matched_fragments": 267, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio profundus", "strain": "strain=500-1", "accession": "GCA_900217235.1", "taxid": 57320, "species_taxid": 57320, "relation_to_type": "type", "validated": true, "ani": 77.8768, "matched_fragments": 251, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio cashew", "strain": "strain=SRB007", "accession": "GCA_009762795.1", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016744135.1", "gtdb_species": "s__Pseudodesulfovibrio sp016744135", "ani": 78.2108, "matched_fragments": 217, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Pseudodesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016342345.1", "gtdb_species": "s__Pseudodesulfovibrio sp016342345", "ani": 78.0344, "matched_fragments": 263, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Pseudodesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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