{ "type": "genome", "identifier": "GCA_022713545.1", "organism": "Bifidobacterium breve", "title": "Bifidobacterium breve", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "Georgia Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022713545.1", "bioproject": "PRJNA747761", "biosample": "SAMN20300813", "wgs_master": "JAIHUE000000000.1", "refseq_category": "na", "taxid": "1685", "species_taxid": "1685", "organism_name": "Bifidobacterium breve", "infraspecific_name": "", "isolate": "B79_002", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2271354v1", "submitter": "Georgia Institute of Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/713/545/GCA_022713545.1_ASM2271354v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium breve" ], "sample_taxid": [ "1685" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.541 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 50.52, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1884236", "Number of Sequences": "502", "Longest Sequences (bp)": "28999", "N50 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"relation_to_type": "type", "validated": true, "ani": 84.6253, "matched_fragments": 249, "total_fragments": 375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium longum", "strain": "strain=NCTC11818", "accession": "GCA_900637335.1", "taxid": 216816, "species_taxid": 216816, "relation_to_type": "type", "validated": true, "ani": 83.9227, "matched_fragments": 239, "total_fragments": 375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium longum subsp. longum", "strain": "strain=JCM 1217", "accession": "GCA_000196555.1", "taxid": 1679, "species_taxid": 216816, "relation_to_type": "type", "validated": true, "ani": 83.9181, "matched_fragments": 239, "total_fragments": 375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium longum subsp. longum", "strain": "strain=KCTC 3128", "accession": "GCA_017132775.1", "taxid": 1679, "species_taxid": 216816, "relation_to_type": "type", 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"matched_fragments": 218, "total_fragments": 375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium amazonense", "strain": "strain=MA1", "accession": "GCA_018555435.2", "taxid": 2809027, "species_taxid": 2809027, "relation_to_type": "type", "validated": true, "ani": 79.3774, "matched_fragments": 141, "total_fragments": 375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum", "strain": "strain=ATCC 25526", "accession": "GCA_022691205.1", "taxid": 31954, "species_taxid": 1694, "relation_to_type": "type", "validated": true, "ani": 78.0218, "matched_fragments": 69, "total_fragments": 375, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 50.52, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001025175.1", "gtdb_species": "s__Bifidobacterium breve", "ani": 98.2652, "matched_fragments": 314, 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