{
    "type": "genome",
    "identifier": "GCA_022713565.1",
    "organism": "Bifidobacterium bifidum",
    "title": "Bifidobacterium bifidum",
    "description": "derived from metagenome; fragmented assembly; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022713565.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20300812",
        "wgs_master": "JAIHUD000000000.1",
        "refseq_category": "na",
        "taxid": "1681",
        "species_taxid": "1681",
        "organism_name": "Bifidobacterium bifidum",
        "infraspecific_name": "",
        "isolate": "B79_001",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2271356v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/713/565/GCA_022713565.1_ASM2271356v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium bifidum"
        ],
        "sample_taxid": [
            "1681"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.449 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 47.45,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1572977",
        "Number of Sequences": "646",
        "Longest Sequences (bp)": "10894",
        "N50 (bp)": "2772",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.4",
        "Number of CDSs": "857",
        "Average Protein Length": "259.1",
        "Coding Ratio (%)": "42.3",
        "Number of rRNAs": "5",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bifidobacterium bifidum",
                "strain": "strain=NCTC13001",
                "accession": "GCA_900637095.1",
                "taxid": 1681,
                "species_taxid": 1681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.5818,
                "matched_fragments": 181,
                "total_fragments": 187,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium bifidum",
                "strain": "strain=ATCC 29521",
                "accession": "GCA_000466525.1",
                "taxid": 1681,
                "species_taxid": 1681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.5624,
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                "total_fragments": 187,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium bifidum",
                "strain": "strain=LMG 11041",
                "accession": "GCA_000741085.1",
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                "species_taxid": 1681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.5397,
                "matched_fragments": 182,
                "total_fragments": 187,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium bifidum",
                "strain": "strain=JCM 1255",
                "accession": "GCA_001025135.1",
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                "species_taxid": 1681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.4942,
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                "total_fragments": 187,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium bifidum",
                "strain": "strain=DSM 20456",
                "accession": "GCA_000771485.1",
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                "species_taxid": 1681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.476,
                "matched_fragments": 182,
                "total_fragments": 187,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
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            "contamination": 8.33,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_001025135.1",
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                "matched_fragments": 183,
                "total_fragments": 187,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "98.27",
                "mean_intra_species_af": "0.95",
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                "num_clustered_genomes": 128,
                "status": "conclusive"
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            {
                "accession": "GCF_009193355.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010667685.1",
                "gtdb_species": "s__Bifidobacterium aerophilum",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001042635.1",
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                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 7,
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            },
            {
                "accession": "GCF_000741165.1",
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                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_008698235.1",
                "gtdb_species": "s__Bifidobacterium rousetti",
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            {
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                "mean_intra_species_ani": "N/A",
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            {
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Bifidobacteriaceae",
        "g__Bifidobacterium",
        "s__Bifidobacterium bifidum",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Bifidobacteriaceae",
        "Bifidobacterium",
        "Bifidobacterium",
        "bifidum"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}