{ "type": "genome", "identifier": "GCA_022714735.1", "organism": "Eubacterium sp.", "title": "Eubacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Georgia Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022714735.1", "bioproject": "PRJNA747761", "biosample": "SAMN20300755", "wgs_master": "JAIHRY000000000.1", "refseq_category": "na", "taxid": "142586", "species_taxid": "142586", "organism_name": "Eubacterium sp.", "infraspecific_name": "", "isolate": "B617_013", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2271473v1", "submitter": "Georgia Institute of Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/714/735/GCA_022714735.1_ASM2271473v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Eubacterium sp." ], "sample_taxid": [ "142586" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.791 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2812945", "Number of Sequences": "207", "Longest Sequences (bp)": "91912", "N50 (bp)": "25896", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.4", "Number of CDSs": "2634", "Average Protein Length": "313.0", "Coding Ratio (%)": "87.9", "Number of rRNAs": "0", "Number of tRNAs": "29", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lachnospira eligens", "strain": "strain=ATCC 27750", "accession": "GCA_000146185.1", "taxid": 39485, "species_taxid": 39485, "relation_to_type": "suspected-type", "validated": true, "ani": 79.787, "matched_fragments": 229, "total_fragments": 836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jutongia hominis", "strain": "strain=BX3", "accession": "GCA_014384965.1", "taxid": 2763664, "species_taxid": 2763664, "relation_to_type": "type", "validated": true, "ani": 79.0049, "matched_fragments": 61, "total_fragments": 836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyrivibrio crossotus", "strain": "strain=DSM 2876", "accession": "GCA_025148445.1", "taxid": 45851, "species_taxid": 45851, "relation_to_type": "type", "validated": true, "ani": 78.4373, "matched_fragments": 89, "total_fragments": 836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyrivibrio crossotus", "strain": "strain=DSM 2876", "accession": "GCA_000156015.1", "taxid": 45851, "species_taxid": 45851, "relation_to_type": "type", "validated": true, "ani": 78.4149, "matched_fragments": 91, "total_fragments": 836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnospira multipara", "strain": "strain=ATCC 19207", "accession": "GCA_000424105.1", "taxid": 28051, "species_taxid": 28051, "relation_to_type": "type", "validated": true, "ani": 78.2848, "matched_fragments": 103, "total_fragments": 836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eubacterium ventriosum", "strain": "strain=ATCC 27560", "accession": "GCA_000153885.1", "taxid": 39496, "species_taxid": 39496, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7892, "matched_fragments": 71, "total_fragments": 836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eubacterium ventriosum", "strain": "strain=ATCC 27560", "accession": "GCA_025150745.1", "taxid": 39496, "species_taxid": 39496, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7865, "matched_fragments": 70, "total_fragments": 836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia wexlerae", "strain": "strain=DSM 19850", "accession": "GCA_000484655.1", "taxid": 418240, "species_taxid": 418240, "relation_to_type": "suspected-type", "validated": true, "ani": 76.571, "matched_fragments": 55, "total_fragments": 836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] fimetarium", "strain": "strain=DSM 9179", "accession": "GCA_900111235.1", "taxid": 99656, "species_taxid": 99656, "relation_to_type": "type", "validated": true, "ani": 76.1374, "matched_fragments": 68, "total_fragments": 836, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014287955.1", "gtdb_species": "s__Lachnospira sp900316325", "ani": 98.9182, "matched_fragments": 700, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.35", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCF_003464165.1", "gtdb_species": "s__Lachnospira sp003451515", "ani": 79.8052, "matched_fragments": 197, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_003458705.1", "gtdb_species": "s__Lachnospira sp003537285", "ani": 79.4998, "matched_fragments": 234, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.4867, "mean_intra_species_ani": "98.01", "min_intra_species_ani": "96.87", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.80", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_900112995.1", "gtdb_species": "s__Lachnospira rogosae_A", "ani": 79.0561, "matched_fragments": 236, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "98.51", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCA_900772425.1", "gtdb_species": "s__Lachnospira sp900772425", "ani": 79.0348, "matched_fragments": 114, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900547255.1", "gtdb_species": "s__Lachnospira sp900547255", "ani": 78.8889, "matched_fragments": 220, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900545725.1", "gtdb_species": "s__Lachnospira sp900545725", "ani": 78.6946, "matched_fragments": 220, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.88", "min_intra_species_ani": "98.45", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_000437735.1", "gtdb_species": "s__Lachnospira sp000437735", "ani": 78.4032, "matched_fragments": 172, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.12", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.82", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_900552795.1", "gtdb_species": "s__Lachnospira sp900552795", "ani": 78.3043, "matched_fragments": 189, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "99.07", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_000436475.1", "gtdb_species": "s__Lachnospira sp000436475", "ani": 78.269, "matched_fragments": 202, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.97", "min_intra_species_ani": "97.42", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_017397445.1", "gtdb_species": "s__Lachnospira sp017397445", "ani": 78.1435, "matched_fragments": 129, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000436535.1", "gtdb_species": "s__Lachnospira sp000436535", "ani": 78.0582, "matched_fragments": 207, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.91", "min_intra_species_ani": "98.77", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_017626275.1", "gtdb_species": "s__Lachnospira sp017626275", "ani": 78.0127, "matched_fragments": 89, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002435585.1", "gtdb_species": "s__Lachnospira sp002435585", "ani": 77.8867, "matched_fragments": 177, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002394205.1", "gtdb_species": "s__Lachnospira sp002394205", "ani": 77.8365, "matched_fragments": 131, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_910587485.1", "gtdb_species": "s__Lachnospira sp910587485", "ani": 77.692, "matched_fragments": 127, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910585095.1", "gtdb_species": "s__Lachnospira sp910585095", "ani": 77.5485, "matched_fragments": 127, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018918265.1", "gtdb_species": "s__Falcatimonas sp018918265", "ani": 77.535, "matched_fragments": 107, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Falcatimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.30", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900551945.1", "gtdb_species": "s__Lachnospira sp900551945", "ani": 77.4034, "matched_fragments": 167, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "99.16", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017935345.1", "gtdb_species": "s__Coprococcus sp017935345", "ani": 76.7902, "matched_fragments": 50, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900111235.1", "gtdb_species": "s__Clostridium_N fimetarium", "ani": 76.1374, "matched_fragments": 68, "total_fragments": 836, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_N", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.325, "cell_length": 0.215, "doubling_h": null, "growth_tmp": 36.972, "optimum_tmp": 37.071, "optimum_ph": null, "genome_size": 3245697.074, "gc_content": 41.131, "coding_genes": 3227.555, "rRNA16S_genes": 6.0, "tRNA_genes": 59.583, "gram_stain": 0.95, "sporulation": 0.0, "motility": 0.5, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Lachnospira", "s__Lachnospira hominis" ], "_genome_taxon": [ "Eubacterium", "sp.", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Lachnospira", "s__Lachnospira hominis", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Lachnospira", "Lachnospira", "hominis" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }