{ "type": "genome", "identifier": "GCA_022716835.1", "organism": "Escherichia coli", "title": "Escherichia coli", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "Georgia Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022716835.1", "bioproject": "PRJNA747761", "biosample": "SAMN20301019", "wgs_master": "JAIICC000000000.1", "refseq_category": "na", "taxid": "562", "species_taxid": "562", "organism_name": "Escherichia coli", "infraspecific_name": "", "isolate": "Map_106_009", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2271683v1", "submitter": "Georgia Institute of Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/716/835/GCA_022716835.1_ASM2271683v1", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Escherichia coli" ], "sample_taxid": [ "562" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mozambique" ], "sample_host_location_id": [], "data_size": "0.910 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.46, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3161948", "Number of Sequences": "756", "Longest Sequences (bp)": "24176", "N50 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"ani": 98.0762, "matched_fragments": 543, "total_fragments": 653, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Shigella dysenteriae", "strain": "strain=ATCC 13313", "accession": "GCA_002949675.1", "taxid": 622, "species_taxid": 622, "relation_to_type": "suspected-type", "validated": true, "ani": 97.519, "matched_fragments": 591, "total_fragments": 653, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Shigella dysenteriae", "strain": "strain=NCTC4837", "accession": "GCA_900457215.1", "taxid": 622, "species_taxid": 622, "relation_to_type": "suspected-type", "validated": true, "ani": 97.4986, "matched_fragments": 595, "total_fragments": 653, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Escherichia coli", "strain": "strain=DSM 30083", "accession": "GCA_000690815.1", "taxid": 562, "species_taxid": 562, "relation_to_type": "neotype", "validated": true, "ani": 97.3671, "matched_fragments": 634, 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