{
    "type": "genome",
    "identifier": "GCA_022720295.1",
    "organism": "Bifidobacterium angulatum",
    "title": "Bifidobacterium angulatum",
    "description": "derived from metagenome; incomplete metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022720295.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20300846",
        "wgs_master": "JAIHVL000000000.1",
        "refseq_category": "na",
        "taxid": "1683",
        "species_taxid": "1683",
        "organism_name": "Bifidobacterium angulatum",
        "infraspecific_name": "",
        "isolate": "CHE503_019",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2272029v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/720/295/GCA_022720295.1_ASM2272029v1",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium angulatum"
        ],
        "sample_taxid": [
            "1683"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.681 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.29,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2398423",
        "Number of Sequences": "138",
        "Longest Sequences (bp)": "160229",
        "N50 (bp)": "39104",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.9",
        "Number of CDSs": "2031",
        "Average Protein Length": "323.6",
        "Coding Ratio (%)": "82.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bifidobacterium angulatum",
                "strain": "strain=DSM 20098",
                "accession": "GCA_000771205.1",
                "taxid": 1683,
                "species_taxid": 1683,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.7582,
                "matched_fragments": 536,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium angulatum",
                "strain": "strain=LMG 11039",
                "accession": "GCA_000741065.1",
                "taxid": 1683,
                "species_taxid": 1683,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.7568,
                "matched_fragments": 545,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium angulatum",
                "strain": "strain=DSM 20098",
                "accession": "GCA_000156635.1",
                "taxid": 1683,
                "species_taxid": 1683,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.7352,
                "matched_fragments": 547,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium angulatum",
                "strain": "strain=JCM 7096",
                "accession": "GCA_001025155.1",
                "taxid": 1683,
                "species_taxid": 1683,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.7082,
                "matched_fragments": 551,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium merycicum",
                "strain": "strain=DSM 6492",
                "accession": "GCA_900129045.1",
                "taxid": 78345,
                "species_taxid": 78345,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.0457,
                "matched_fragments": 477,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium pongonis",
                "strain": "strain=64T4",
                "accession": "GCA_019331805.1",
                "taxid": 2834432,
                "species_taxid": 2834432,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9336,
                "matched_fragments": 455,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium miconisargentati",
                "strain": "strain=82T25",
                "accession": "GCA_019331675.1",
                "taxid": 2834437,
                "species_taxid": 2834437,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7985,
                "matched_fragments": 295,
                "total_fragments": 732,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.29,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001025155.1",
                "gtdb_species": "s__Bifidobacterium angulatum",
                "ani": 98.7082,
                "matched_fragments": 551,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.71",
                "min_intra_species_ani": "95.22",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900129045.1",
                "gtdb_species": "s__Bifidobacterium merycicum",
                "ani": 88.029,
                "matched_fragments": 478,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.29",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_012932675.1",
                "gtdb_species": "s__Bifidobacterium sp012932675",
                "ani": 87.4859,
                "matched_fragments": 500,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018555385.1",
                "gtdb_species": "s__Bifidobacterium sp018555385",
                "ani": 80.7333,
                "matched_fragments": 301,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002860365.1",
                "gtdb_species": "s__Bifidobacterium parmae",
                "ani": 80.7104,
                "matched_fragments": 304,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010667645.1",
                "gtdb_species": "s__Bifidobacterium platyrrhinorum",
                "ani": 80.6756,
                "matched_fragments": 311,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000741785.1",
                "gtdb_species": "s__Bifidobacterium stellenboschense",
                "ani": 80.6091,
                "matched_fragments": 311,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003129905.1",
                "gtdb_species": "s__Bifidobacterium callitrichidarum",
                "ani": 80.5789,
                "matched_fragments": 292,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018555635.1",
                "gtdb_species": "s__Bifidobacterium sp018555635",
                "ani": 80.4458,
                "matched_fragments": 295,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012932445.1",
                "gtdb_species": "s__Bifidobacterium sp012932445",
                "ani": 80.2733,
                "matched_fragments": 224,
                "total_fragments": 732,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.022,
        "cell_length": 0.328,
        "doubling_h": 0.178,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.377,
        "genome_size": 2031593.0,
        "gc_content": 59.347,
        "coding_genes": 1547.5,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 53.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Bifidobacteriaceae",
        "g__Bifidobacterium",
        "s__Bifidobacterium angulatum"
    ],
    "_genome_taxon": [
        "Bifidobacterium",
        "angulatum",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Bifidobacteriaceae",
        "g__Bifidobacterium",
        "s__Bifidobacterium angulatum",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Bifidobacteriaceae",
        "Bifidobacterium",
        "Bifidobacterium",
        "angulatum"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}