{
    "type": "genome",
    "identifier": "GCA_022720775.1",
    "organism": "Phocaeicola vulgatus",
    "title": "Phocaeicola vulgatus",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022720775.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20300730",
        "wgs_master": "JAIHQZ000000000.1",
        "refseq_category": "na",
        "taxid": "821",
        "species_taxid": "821",
        "organism_name": "Phocaeicola vulgatus",
        "infraspecific_name": "",
        "isolate": "B596_001",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2272077v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/720/775/GCA_022720775.1_ASM2272077v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Phocaeicola vulgatus"
        ],
        "sample_taxid": [
            "821"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.417 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4946683",
        "Number of Sequences": "214",
        "Longest Sequences (bp)": "240761",
        "N50 (bp)": "54698",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.6",
        "Number of CDSs": "3925",
        "Average Protein Length": "363.2",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "5",
        "Number of tRNAs": "76",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Phocaeicola vulgatus",
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                "accession": "GCA_016766915.1",
                "taxid": 821,
                "species_taxid": 821,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1221,
                "total_fragments": 1540,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Phocaeicola vulgatus",
                "strain": "strain=ATCC 8482",
                "accession": "GCA_000012825.1",
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                "species_taxid": 821,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.8114,
                "matched_fragments": 1224,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Phocaeicola dorei",
                "strain": "strain=DSM 17855",
                "accession": "GCA_013009555.1",
                "taxid": 357276,
                "species_taxid": 357276,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.4341,
                "matched_fragments": 1214,
                "total_fragments": 1540,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Phocaeicola dorei",
                "strain": "strain=DSM 17855",
                "accession": "GCA_000156075.1",
                "taxid": 357276,
                "species_taxid": 357276,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.3924,
                "matched_fragments": 1227,
                "total_fragments": 1540,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Phocaeicola dorei",
                "strain": "strain=DSM 17855",
                "accession": "GCA_025146415.1",
                "taxid": 357276,
                "species_taxid": 357276,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.3716,
                "matched_fragments": 1228,
                "total_fragments": 1540,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Phocaeicola sartorii",
                "strain": "strain=DSM 21941",
                "accession": "GCA_024622025.1",
                "taxid": 671267,
                "species_taxid": 671267,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.402,
                "matched_fragments": 1031,
                "total_fragments": 1540,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides humanifaecis",
                "strain": "strain=KGMB07931",
                "accession": "GCA_017309675.2",
                "taxid": 2792859,
                "species_taxid": 2792859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.703,
                "matched_fragments": 201,
                "total_fragments": 1540,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides thetaiotaomicron",
                "strain": "strain=VPI 5482",
                "accession": "GCA_022453665.1",
                "taxid": 818,
                "species_taxid": 818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1288,
                "matched_fragments": 216,
                "total_fragments": 1540,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides uniformis",
                "strain": "strain=ATCC 8492",
                "accession": "GCA_025147485.1",
                "taxid": 820,
                "species_taxid": 820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8491,
                "matched_fragments": 186,
                "total_fragments": 1540,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000012825.1",
                "gtdb_species": "s__Phocaeicola vulgatus",
                "ani": 98.8114,
                "matched_fragments": 1224,
                "total_fragments": 1540,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.359,
                "mean_intra_species_ani": "98.84",
                "min_intra_species_ani": "95.43",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.61",
                "num_clustered_genomes": 263,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_013009555.1",
                "gtdb_species": "s__Phocaeicola dorei",
                "ani": 95.4169,
                "matched_fragments": 1215,
                "total_fragments": 1540,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.359,
                "mean_intra_species_ani": "99.04",
                "min_intra_species_ani": "97.27",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.54",
                "num_clustered_genomes": 104,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_900760795.1",
                "gtdb_species": "s__Phocaeicola sp900760795",
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                "matched_fragments": 800,
                "total_fragments": 1540,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000614185.1",
                "gtdb_species": "s__Phocaeicola sartorii",
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                "matched_fragments": 1021,
                "total_fragments": 1540,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "98.44",
                "mean_intra_species_af": "0.85",
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                "num_clustered_genomes": 7,
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            },
            {
                "accession": "GCA_011959205.1",
                "gtdb_species": "s__Phocaeicola sp011959205",
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                "matched_fragments": 787,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
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                "mean_intra_species_ani": "99.87",
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                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000382445.1",
                "gtdb_species": "s__Phocaeicola massiliensis",
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                "matched_fragments": 620,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.84",
                "min_intra_species_ani": "98.03",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.62",
                "num_clustered_genomes": 25,
                "status": "-"
            },
            {
                "accession": "GCA_902388365.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 3,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": -0.523,
        "doubling_h": null,
        "growth_tmp": 37.0,
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        "genome_size": 2530631.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Phocaeicola",
        "s__Phocaeicola vulgatus"
    ],
    "_genome_taxon": [
        "Phocaeicola",
        "vulgatus",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Phocaeicola",
        "s__Phocaeicola vulgatus",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Phocaeicola",
        "Phocaeicola",
        "vulgatus"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}