{ "tc_result": [ { "organism_name": "Bifidobacterium bifidum", "strain": "strain=JCM 1255", "accession": "GCA_001025135.1", "taxid": 1681, "species_taxid": 1681, "relation_to_type": "type", "validated": true, "ani": 99.0758, "matched_fragments": 637, "total_fragments": 699, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium bifidum", "strain": "strain=NCTC13001", "accession": "GCA_900637095.1", "taxid": 1681, "species_taxid": 1681, "relation_to_type": "type", "validated": true, "ani": 99.0747, "matched_fragments": 636, "total_fragments": 699, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium bifidum", "strain": "strain=DSM 20456", "accession": "GCA_000771485.1", "taxid": 1681, "species_taxid": 1681, "relation_to_type": "type", "validated": true, "ani": 99.0597, "matched_fragments": 625, "total_fragments": 699, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium bifidum", "strain": "strain=LMG 11041", "accession": "GCA_000741085.1", "taxid": 1681, "species_taxid": 1681, "relation_to_type": "type", "validated": true, "ani": 99.0399, "matched_fragments": 641, "total_fragments": 699, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium bifidum", "strain": "strain=ATCC 29521", "accession": "GCA_000466525.1", "taxid": 1681, "species_taxid": 1681, "relation_to_type": "type", "validated": true, "ani": 99.0192, "matched_fragments": 634, "total_fragments": 699, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium longum subsp. longum", "strain": "strain=LMG 13197", "accession": "GCA_000741245.1", "taxid": 1679, "species_taxid": 216816, "relation_to_type": "type", "validated": true, "ani": 82.8064, "matched_fragments": 353, "total_fragments": 699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium longum", "strain": "strain=NCTC11818", "accession": "GCA_900637335.1", "taxid": 216816, "species_taxid": 216816, "relation_to_type": "type", "validated": true, "ani": 82.7534, "matched_fragments": 356, "total_fragments": 699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium longum subsp. longum", "strain": "strain=JCM 1217", "accession": "GCA_000196555.1", "taxid": 1679, "species_taxid": 216816, "relation_to_type": "type", "validated": true, "ani": 82.7339, "matched_fragments": 356, "total_fragments": 699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium longum", "strain": "strain=DSM 20219", "accession": "GCA_900104835.1", "taxid": 216816, "species_taxid": 216816, "relation_to_type": "type", "validated": true, "ani": 82.725, "matched_fragments": 357, "total_fragments": 699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium longum subsp. longum", "strain": "strain=KCTC 3128", "accession": "GCA_017132775.1", "taxid": 1679, "species_taxid": 216816, "relation_to_type": "type", "validated": true, "ani": 82.6463, "matched_fragments": 362, "total_fragments": 699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium amazonense", "strain": "strain=MA1", "accession": "GCA_018555435.2", "taxid": 2809027, "species_taxid": 2809027, "relation_to_type": "type", "validated": true, "ani": 82.2583, "matched_fragments": 387, "total_fragments": 699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium miconisargentati", "strain": "strain=82T25", "accession": "GCA_019331675.1", "taxid": 2834437, "species_taxid": 2834437, "relation_to_type": "type", "validated": true, "ani": 81.6265, "matched_fragments": 369, "total_fragments": 699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum", "strain": "strain=ATCC 25526", "accession": "GCA_022691205.1", "taxid": 31954, "species_taxid": 1694, "relation_to_type": "type", "validated": true, "ani": 79.3171, "matched_fragments": 244, "total_fragments": 699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium mizhiense", "strain": "strain=S053-2", "accession": "GCA_020884755.1", "taxid": 2879940, "species_taxid": 2879940, "relation_to_type": "type", "validated": true, "ani": 78.0889, "matched_fragments": 122, "total_fragments": 699, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 76.5235, "matched_fragments": 77, "total_fragments": 699, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.58, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_001025135.1", "gtdb_species": "s__Bifidobacterium bifidum", "ani": 99.0758, "matched_fragments": 637, "total_fragments": 699, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 128, "status": "conclusive" }, { "accession": "GCF_009193355.1", "gtdb_species": "s__Bifidobacterium leontopitheci", "ani": 83.1248, "matched_fragments": 472, "total_fragments": 699, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000196555.1", "gtdb_species": "s__Bifidobacterium longum", "ani": 82.737, 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"matched_fragments": 432, "total_fragments": 699, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.51", "min_intra_species_ani": "98.97", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.93", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_018555385.1", "gtdb_species": "s__Bifidobacterium sp018555385", "ani": 82.1233, "matched_fragments": 388, "total_fragments": 699, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010667645.1", "gtdb_species": "s__Bifidobacterium platyrrhinorum", "ani": 82.081, 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"total_fragments": 699, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009299505.1", "gtdb_species": "s__Bifidobacterium ramosum", "ani": 82.0203, "matched_fragments": 414, "total_fragments": 699, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008698235.1", "gtdb_species": "s__Bifidobacterium rousetti", "ani": 81.9995, "matched_fragments": 389, "total_fragments": 699, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.97", "min_intra_species_ani": "96.97", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018555335.1", "gtdb_species": "s__Bifidobacterium sp018555335", "ani": 81.9126, "matched_fragments": 378, "total_fragments": 699, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000741785.1", "gtdb_species": "s__Bifidobacterium stellenboschense", "ani": 81.875, "matched_fragments": 376, "total_fragments": 699, 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000771405.1", "gtdb_species": "s__Bifidobacterium pullorum", "ani": 80.9588, "matched_fragments": 312, "total_fragments": 699, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "97.42", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003951095.1", "gtdb_species": "s__Bifidobacterium goeldii", "ani": 80.1032, "matched_fragments": 282, "total_fragments": 699, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }