{
    "type": "genome",
    "identifier": "GCA_022721375.1",
    "organism": "Prevotella stercorea",
    "title": "Prevotella stercorea",
    "description": "derived from metagenome; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022721375.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20301097",
        "wgs_master": "JAIIFC000000000.1",
        "refseq_category": "na",
        "taxid": "363265",
        "species_taxid": "363265",
        "organism_name": "Prevotella stercorea",
        "infraspecific_name": "",
        "isolate": "Map_115_028",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2272137v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/721/375/GCA_022721375.1_ASM2272137v1",
        "excluded_from_refseq": "derived from metagenome; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Prevotella stercorea"
        ],
        "sample_taxid": [
            "363265"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mozambique"
        ],
        "sample_host_location_id": [],
        "data_size": "0.628 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 68.11,
        "contamination": 0.46,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2180897",
        "Number of Sequences": "548",
        "Longest Sequences (bp)": "24651",
        "N50 (bp)": "5402",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.4",
        "Number of CDSs": "1316",
        "Average Protein Length": "337.4",
        "Coding Ratio (%)": "61.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Prevotella stercorea",
                "strain": "strain=DSM 18206",
                "accession": "GCA_000235885.1",
                "taxid": 363265,
                "species_taxid": 363265,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 96.9769,
                "matched_fragments": 409,
                "total_fragments": 442,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Prevotella pectinovora",
                "strain": "strain=P4-76",
                "accession": "GCA_000834015.1",
                "taxid": 1602169,
                "species_taxid": 1602169,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1603,
                "matched_fragments": 90,
                "total_fragments": 442,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hallella faecis",
                "strain": "strain=CLA-AA-H145",
                "accession": "GCA_018789675.1",
                "taxid": 2841596,
                "species_taxid": 2841596,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3461,
                "matched_fragments": 78,
                "total_fragments": 442,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella lascolaii",
                "strain": "strain=khD1",
                "accession": "GCA_900079775.1",
                "taxid": 1776379,
                "species_taxid": 1776379,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2767,
                "matched_fragments": 86,
                "total_fragments": 442,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella copri",
                "strain": "strain=DSM 18205",
                "accession": "GCA_000157935.1",
                "taxid": 165179,
                "species_taxid": 165179,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.9535,
                "matched_fragments": 55,
                "total_fragments": 442,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella copri",
                "strain": "strain=DSM 18205",
                "accession": "GCA_009495405.1",
                "taxid": 165179,
                "species_taxid": 165179,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.9535,
                "matched_fragments": 55,
                "total_fragments": 442,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella lacticifex",
                "strain": "strain=R5019",
                "accession": "GCA_019973375.1",
                "taxid": 2854755,
                "species_taxid": 2854755,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7395,
                "matched_fragments": 64,
                "total_fragments": 442,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 68.11,
            "contamination": 0.46,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000235885.1",
                "gtdb_species": "s__Prevotella stercorea",
                "ani": 96.9769,
                "matched_fragments": 409,
                "total_fragments": 442,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.02",
                "min_intra_species_ani": "96.84",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_019052365.1",
                "gtdb_species": "s__Prevotella sp000434975",
                "ani": 88.4908,
                "matched_fragments": 372,
                "total_fragments": 442,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.22",
                "min_intra_species_ani": "96.59",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_900550035.1",
                "gtdb_species": "s__Prevotella sp900550035",
                "ani": 80.2707,
                "matched_fragments": 219,
                "total_fragments": 442,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.93",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002265625.1",
                "gtdb_species": "s__Prevotella sp002265625",
                "ani": 80.0178,
                "matched_fragments": 232,
                "total_fragments": 442,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.90",
                "min_intra_species_ani": "96.80",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002490315.1",
                "gtdb_species": "s__Prevotella sp002490315",
                "ani": 80.0115,
                "matched_fragments": 186,
                "total_fragments": 442,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900552515.1",
                "gtdb_species": "s__Prevotella sp900552515",
                "ani": 79.8883,
                "matched_fragments": 163,
                "total_fragments": 442,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.61",
                "min_intra_species_ani": "97.50",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900553155.1",
                "gtdb_species": "s__Prevotella sp900553155",
                "ani": 79.7234,
                "matched_fragments": 150,
                "total_fragments": 442,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.04",
                "min_intra_species_ani": "96.93",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900544495.1",
                "gtdb_species": "s__Prevotella sp900544495",
                "ani": 79.4863,
                "matched_fragments": 189,
                "total_fragments": 442,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.45",
                "min_intra_species_ani": "98.42",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900546575.1",
                "gtdb_species": "s__Prevotella sp900546575",
                "ani": 79.2769,
                "matched_fragments": 196,
                "total_fragments": 442,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.21",
                "min_intra_species_ani": "95.49",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.482,
        "cell_length": 0.064,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 8.0,
        "genome_size": 3092669.0,
        "gc_content": 45.137,
        "coding_genes": 2508.172,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 50.875,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Prevotella",
        "s__Prevotella stercorea"
    ],
    "_genome_taxon": [
        "Prevotella",
        "stercorea",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Prevotella",
        "s__Prevotella stercorea",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Prevotella",
        "Prevotella",
        "stercorea"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}