{
    "type": "genome",
    "identifier": "GCA_022722335.1",
    "organism": "Prevotella sp.",
    "title": "Prevotella sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022722335.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20301943",
        "wgs_master": "JAIJLP000000000.1",
        "refseq_category": "na",
        "taxid": "59823",
        "species_taxid": "59823",
        "organism_name": "Prevotella sp.",
        "infraspecific_name": "",
        "isolate": "Map_62_002",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2272233v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/722/335/GCA_022722335.1_ASM2272233v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Prevotella sp."
        ],
        "sample_taxid": [
            "59823"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mozambique"
        ],
        "sample_host_location_id": [],
        "data_size": "1.153 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 66.89,
        "contamination": 2.46,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4006497",
        "Number of Sequences": "714",
        "Longest Sequences (bp)": "161901",
        "N50 (bp)": "11182",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.1",
        "Number of CDSs": "2773",
        "Average Protein Length": "338.4",
        "Coding Ratio (%)": "70.3",
        "Number of rRNAs": "6",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Prevotella hominis",
                "strain": "strain=BCRC 81118",
                "accession": "GCA_004535825.1",
                "taxid": 2518605,
                "species_taxid": 2518605,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.008,
                "matched_fragments": 407,
                "total_fragments": 980,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella copri",
                "strain": "strain=DSM 18205",
                "accession": "GCA_009495405.1",
                "taxid": 165179,
                "species_taxid": 165179,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.9721,
                "matched_fragments": 384,
                "total_fragments": 980,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella copri",
                "strain": "strain=DSM 18205",
                "accession": "GCA_000157935.1",
                "taxid": 165179,
                "species_taxid": 165179,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.8559,
                "matched_fragments": 394,
                "total_fragments": 980,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella copri",
                "strain": "strain=DSM 18205",
                "accession": "GCA_025151535.1",
                "taxid": 165179,
                "species_taxid": 165179,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.8347,
                "matched_fragments": 385,
                "total_fragments": 980,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella timonensis",
                "strain": "strain=4401737",
                "accession": "GCA_000455445.1",
                "taxid": 386414,
                "species_taxid": 386414,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8471,
                "matched_fragments": 54,
                "total_fragments": 980,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella stercorea",
                "strain": "strain=DSM 18206",
                "accession": "GCA_000235885.1",
                "taxid": 363265,
                "species_taxid": 363265,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.8428,
                "matched_fragments": 132,
                "total_fragments": 980,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella illustrans",
                "strain": "strain=A2931",
                "accession": "GCA_017426725.1",
                "taxid": 2800387,
                "species_taxid": 2800387,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3524,
                "matched_fragments": 84,
                "total_fragments": 980,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella baroniae",
                "strain": "strain=DSM 16972",
                "accession": "GCA_000426585.1",
                "taxid": 305719,
                "species_taxid": 305719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4883,
                "matched_fragments": 80,
                "total_fragments": 980,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella baroniae",
                "strain": "strain=JCM 13447",
                "accession": "GCA_000613565.1",
                "taxid": 305719,
                "species_taxid": 305719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4043,
                "matched_fragments": 80,
                "total_fragments": 980,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hallella faecis",
                "strain": "strain=CLA-AA-H145",
                "accession": "GCA_018789675.1",
                "taxid": 2841596,
                "species_taxid": 2841596,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1515,
                "matched_fragments": 126,
                "total_fragments": 980,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella mizrahii",
                "strain": "strain=LKV-178-WT-2A",
                "accession": "GCA_009695775.1",
                "taxid": 2606637,
                "species_taxid": 2606637,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6255,
                "matched_fragments": 91,
                "total_fragments": 980,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella lacticifex",
                "strain": "strain=R5019",
                "accession": "GCA_019973375.1",
                "taxid": 2854755,
                "species_taxid": 2854755,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3791,
                "matched_fragments": 87,
                "total_fragments": 980,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella albensis",
                "strain": "strain=JCM 12258",
                "accession": "GCA_000613525.1",
                "taxid": 77768,
                "species_taxid": 77768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2901,
                "matched_fragments": 82,
                "total_fragments": 980,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 66.89,
            "contamination": 2.46,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009495355.1",
                "gtdb_species": "s__Prevotella sp900313215",
                "ani": 96.7939,
                "matched_fragments": 658,
                "total_fragments": 980,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.34",
                "min_intra_species_ani": "96.92",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 15,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900556395.1",
                "gtdb_species": "s__Prevotella sp900556395",
                "ani": 86.4702,
                "matched_fragments": 489,
                "total_fragments": 980,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.82",
                "min_intra_species_ani": "97.81",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002439605.1",
                "gtdb_species": "s__Prevotella sp002439605",
                "ani": 84.6834,
                "matched_fragments": 443,
                "total_fragments": 980,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.57",
                "min_intra_species_ani": "99.57",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_015074785.1",
                "gtdb_species": "s__Prevotella sp015074785",
                "ani": 81.2916,
                "matched_fragments": 414,
                "total_fragments": 980,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.6733,
                "mean_intra_species_ani": "96.50",
                "min_intra_species_ani": "95.88",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 45,
                "status": "-"
            },
            {
                "accession": "GCA_019249655.1",
                "gtdb_species": "s__Prevotella sp900767615",
                "ani": 81.2384,
                "matched_fragments": 435,
                "total_fragments": 980,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.47",
                "min_intra_species_ani": "95.77",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_900765465.1",
                "gtdb_species": "s__Prevotella sp900765465",
                "ani": 81.0362,
                "matched_fragments": 213,
                "total_fragments": 980,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000157935.1",
                "gtdb_species": "s__Prevotella copri",
                "ani": 80.7707,
                "matched_fragments": 399,
                "total_fragments": 980,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.6733,
                "mean_intra_species_ani": "96.34",
                "min_intra_species_ani": "95.85",
                "mean_intra_species_af": "0.75",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 97,
                "status": "-"
            },
            {
                "accession": "GCA_900555035.1",
                "gtdb_species": "s__Prevotella sp900555035",
                "ani": 80.5452,
                "matched_fragments": 326,
                "total_fragments": 980,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000436035.1",
                "gtdb_species": "s__Prevotella sp000436035",
                "ani": 79.9292,
                "matched_fragments": 330,
                "total_fragments": 980,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.58",
                "min_intra_species_ani": "97.92",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900548535.1",
                "gtdb_species": "s__Prevotella sp900548535",
                "ani": 79.8669,
                "matched_fragments": 352,
                "total_fragments": 980,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002297965.1",
                "gtdb_species": "s__Prevotella sp002297965",
                "ani": 79.6371,
                "matched_fragments": 295,
                "total_fragments": 980,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "99.14",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.226,
        "cell_length": 0.114,
        "doubling_h": null,
        "growth_tmp": 36.755,
        "optimum_tmp": 35.219,
        "optimum_ph": 7.109,
        "genome_size": 3037444.691,
        "gc_content": 45.137,
        "coding_genes": 2508.172,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 50.875,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.975,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.025,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Prevotella",
        "s__Prevotella sp900313215"
    ],
    "_genome_taxon": [
        "Prevotella",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Prevotella",
        "s__Prevotella sp900313215",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Prevotella",
        "Prevotella",
        "sp900313215"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}