{ "type": "genome", "identifier": "GCA_022722855.1", "organism": "Prevotella sp.", "title": "Prevotella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Georgia Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022722855.1", "bioproject": "PRJNA747761", "biosample": "SAMN20301914", "wgs_master": "JAIJKM000000000.1", "refseq_category": "na", "taxid": "59823", "species_taxid": "59823", "organism_name": "Prevotella sp.", "infraspecific_name": "", "isolate": "Map_6_001", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2272285v1", "submitter": "Georgia Institute of Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/722/855/GCA_022722855.1_ASM2272285v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella sp." ], "sample_taxid": [ "59823" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mozambique" ], "sample_host_location_id": [], "data_size": "1.012 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 82.56, "contamination": 10.94, "strain_heterogeneity": 75.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3528529", "Number of Sequences": "346", "Longest Sequences (bp)": "73139", "N50 (bp)": "20010", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.9", "Number of CDSs": "2562", "Average Protein Length": "360.7", "Coding Ratio (%)": "78.6", "Number of rRNAs": "1", "Number of tRNAs": "64", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_000157935.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 85.2977, "matched_fragments": 591, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_009495405.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 85.2803, "matched_fragments": 574, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_025151535.1", "taxid": 165179, 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"relation_to_type": "type", "validated": true, "ani": 77.121, "matched_fragments": 103, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=JCM 12258", "accession": "GCA_000613525.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 77.1174, "matched_fragments": 115, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=DSM 11370", "accession": "GCA_000426565.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 77.1074, "matched_fragments": 119, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 76.7394, "matched_fragments": 63, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella mizrahii", "strain": "strain=LKV-178-WT-2A", "accession": "GCA_009695775.1", "taxid": 2606637, "species_taxid": 2606637, "relation_to_type": "type", "validated": true, "ani": 76.6112, "matched_fragments": 92, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 82.56, "contamination": 10.94, "strain_heterogeneity": 75.0 }, "gtdb_result": [ { "accession": "GCF_002224675.1", "gtdb_species": "s__Prevotella copri_A", "ani": 95.4346, "matched_fragments": 804, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.28", "min_intra_species_ani": "96.07", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.74", "num_clustered_genomes": 13, "status": 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