{ "type": "genome", "identifier": "GCA_022722905.1", "organism": "[Eubacterium] rectale", "title": "[Eubacterium] rectale", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Georgia Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022722905.1", "bioproject": "PRJNA747761", "biosample": "SAMN20301911", "wgs_master": "JAIJKJ000000000.1", "refseq_category": "na", "taxid": "39491", "species_taxid": "39491", "organism_name": "[Eubacterium] rectale", "infraspecific_name": "", "isolate": "Map_59_015", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2272290v1", "submitter": "Georgia Institute of Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/722/905/GCA_022722905.1_ASM2272290v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "[Eubacterium] rectale" ], "sample_taxid": [ "39491" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mozambique" ], "sample_host_location_id": [], "data_size": "0.683 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 74.62, "contamination": 6.98, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2366034", "Number of Sequences": "799", "Longest Sequences (bp)": "15667", "N50 (bp)": "3754", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.3", "Number of CDSs": "1638", "Average Protein Length": "282.5", "Coding Ratio (%)": "58.7", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseburia faecis", "strain": "strain=M72", "accession": "GCA_001406815.1", "taxid": 301302, "species_taxid": 301302, "relation_to_type": "type", "validated": true, "ani": 81.4433, "matched_fragments": 81, "total_fragments": 368, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia inulinivorans", "strain": "strain=DSM 16841", "accession": "GCA_000174195.1", "taxid": 360807, "species_taxid": 360807, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6641, "matched_fragments": 56, "total_fragments": 368, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 74.62, "contamination": 6.98, "strain_heterogeneity": 66.67 }, "gtdb_result": [ { "accession": "GCA_000020605.1", "gtdb_species": "s__Agathobacter rectalis", "ani": 96.9176, "matched_fragments": 344, "total_fragments": 368, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.37", "min_intra_species_ani": "96.06", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.65", "num_clustered_genomes": 151, "status": "conclusive" }, { "accession": "GCA_900546625.1", "gtdb_species": "s__Agathobacter sp900546625", "ani": 94.638, "matched_fragments": 333, "total_fragments": 368, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.96", "min_intra_species_ani": "96.96", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900317585.1", "gtdb_species": "s__Agathobacter sp900317585", "ani": 93.7365, "matched_fragments": 302, "total_fragments": 368, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.18", "min_intra_species_ani": "95.52", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001406815.1", "gtdb_species": "s__Agathobacter faecis", "ani": 81.3884, "matched_fragments": 82, "total_fragments": 368, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.10", "min_intra_species_ani": "97.07", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.62", "num_clustered_genomes": 43, "status": "-" }, { "accession": "GCA_905209075.1", "gtdb_species": "s__Agathobacter sp905209075", "ani": 80.7525, "matched_fragments": 141, "total_fragments": 368, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.22", "min_intra_species_ani": "97.67", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.73", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003470905.1", "gtdb_species": "s__Roseburia sp003470905", "ani": 78.0282, "matched_fragments": 57, "total_fragments": 368, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.82", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_900548765.1", "gtdb_species": "s__Agathobacter sp900548765", "ani": 77.8581, "matched_fragments": 93, "total_fragments": 368, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.03", "min_intra_species_ani": "97.03", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900543445.1", "gtdb_species": "s__Agathobacter sp900543445", "ani": 77.8275, "matched_fragments": 62, "total_fragments": 368, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.64", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.23, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 3460021.133, "gc_content": 40.483, "coding_genes": 3210.4, "rRNA16S_genes": 5.0, "tRNA_genes": 59.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Agathobacter", "s__Agathobacter rectalis" ], "_genome_taxon": [ "[Eubacterium]", "rectale", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Agathobacter", "s__Agathobacter rectalis", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Agathobacter", "Agathobacter", "rectalis" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }