{
    "type": "genome",
    "identifier": "GCA_022725855.1",
    "organism": "Streptococcus sp.",
    "title": "Streptococcus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022725855.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20301659",
        "wgs_master": "JAIJAS000000000.1",
        "refseq_category": "na",
        "taxid": "1306",
        "species_taxid": "1306",
        "organism_name": "Streptococcus sp.",
        "infraspecific_name": "",
        "isolate": "Map_27_006",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2272585v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/725/855/GCA_022725855.1_ASM2272585v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptococcus sp."
        ],
        "sample_taxid": [
            "1306"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mozambique"
        ],
        "sample_host_location_id": [],
        "data_size": "0.618 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 6.19,
        "strain_heterogeneity": 20.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2150072",
        "Number of Sequences": "509",
        "Longest Sequences (bp)": "30887",
        "N50 (bp)": "6221",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.3",
        "Number of CDSs": "1628",
        "Average Protein Length": "279.3",
        "Coding Ratio (%)": "63.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "28",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptococcus salivarius",
                "strain": "strain=ATCC 7073",
                "accession": "GCA_900143035.1",
                "taxid": 1304,
                "species_taxid": 1304,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.8849,
                "matched_fragments": 383,
                "total_fragments": 450,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus salivarius",
                "strain": "strain=NCTC 8618",
                "accession": "GCA_000785515.1",
                "taxid": 1304,
                "species_taxid": 1304,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.8522,
                "matched_fragments": 382,
                "total_fragments": 450,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus salivarius",
                "strain": "strain=NCTC8618",
                "accession": "GCA_900636435.1",
                "taxid": 1304,
                "species_taxid": 1304,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.8521,
                "matched_fragments": 381,
                "total_fragments": 450,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus salivarius",
                "strain": "strain=JCM 5707",
                "accession": "GCA_019972895.1",
                "taxid": 1304,
                "species_taxid": 1304,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.8165,
                "matched_fragments": 384,
                "total_fragments": 450,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus vestibularis",
                "strain": "strain=ATCC 49124",
                "accession": "GCA_000188295.1",
                "taxid": 1343,
                "species_taxid": 1343,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2833,
                "matched_fragments": 354,
                "total_fragments": 450,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus thermophilus",
                "strain": "strain=DSM 20617",
                "accession": "GCA_019972875.1",
                "taxid": 1308,
                "species_taxid": 1308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2411,
                "matched_fragments": 332,
                "total_fragments": 450,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus thermophilus",
                "strain": "strain=ATCC 19258",
                "accession": "GCA_004354505.1",
                "taxid": 1308,
                "species_taxid": 1308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2286,
                "matched_fragments": 331,
                "total_fragments": 450,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus thermophilus",
                "strain": "strain=ATCC 19258",
                "accession": "GCA_010120595.1",
                "taxid": 1308,
                "species_taxid": 1308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1742,
                "matched_fragments": 335,
                "total_fragments": 450,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus vulneris",
                "strain": "strain=DM3B3",
                "accession": "GCA_019218685.1",
                "taxid": 2853160,
                "species_taxid": 2853160,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.504,
                "matched_fragments": 95,
                "total_fragments": 450,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptococcus parasuis",
                "strain": "strain=SUT-286",
                "accession": "GCA_021654455.1",
                "taxid": 1501662,
                "species_taxid": 1501662,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.1902,
                "matched_fragments": 61,
                "total_fragments": 450,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 6.19,
            "strain_heterogeneity": 20.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_010604095.1",
                "gtdb_species": "s__Streptococcus sp000187445",
                "ani": 96.1112,
                "matched_fragments": 402,
                "total_fragments": 450,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.94",
                "min_intra_species_ani": "96.18",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 19,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009738225.1",
                "gtdb_species": "s__Streptococcus sp001556435",
                "ani": 89.0086,
                "matched_fragments": 392,
                "total_fragments": 450,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.11",
                "min_intra_species_ani": "95.45",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 79,
                "status": "-"
            },
            {
                "accession": "GCF_000785515.1",
                "gtdb_species": "s__Streptococcus salivarius",
                "ani": 88.8522,
                "matched_fragments": 382,
                "total_fragments": 450,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.08",
                "min_intra_species_ani": "95.32",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 131,
                "status": "-"
            },
            {
                "accession": "GCF_000188295.1",
                "gtdb_species": "s__Streptococcus vestibularis",
                "ani": 88.2833,
                "matched_fragments": 354,
                "total_fragments": 450,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.03",
                "min_intra_species_ani": "95.83",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCA_003521145.1",
                "gtdb_species": "s__Streptococcus sp003521145",
                "ani": 87.7932,
                "matched_fragments": 292,
                "total_fragments": 450,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010120595.1",
                "gtdb_species": "s__Streptococcus thermophilus",
                "ani": 87.2117,
                "matched_fragments": 334,
                "total_fragments": 450,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "97.47",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 130,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.157,
        "cell_length": -0.167,
        "doubling_h": -0.216,
        "growth_tmp": 36.667,
        "optimum_tmp": 36.284,
        "optimum_ph": 6.89,
        "genome_size": 2093253.959,
        "gc_content": 39.262,
        "coding_genes": 1944.968,
        "rRNA16S_genes": 4.791,
        "tRNA_genes": 62.087,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.285,
        "facultative_respiration": 0.337,
        "anaerobic_respiration": 0.146,
        "aerobic_respiration": 0.516,
        "mesophilic_range_tmp": 0.969,
        "thermophilic_range_tmp": 0.03,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.943,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.056,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Streptococcaceae",
        "g__Streptococcus",
        "s__Streptococcus sp000187445"
    ],
    "_genome_taxon": [
        "Streptococcus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Streptococcaceae",
        "g__Streptococcus",
        "s__Streptococcus sp000187445",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Streptococcaceae",
        "Streptococcus",
        "Streptococcus",
        "sp000187445"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}