{ "type": "genome", "identifier": "GCA_022727255.1", "organism": "Oscillospiraceae bacterium", "title": "Oscillospiraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Georgia Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022727255.1", "bioproject": "PRJNA747761", "biosample": "SAMN20301557", "wgs_master": "JAIIWU000000000.1", "refseq_category": "na", "taxid": "2485925", "species_taxid": "2485925", "organism_name": "Oscillospiraceae bacterium", "infraspecific_name": "", "isolate": "Map_2_010", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2272725v1", "submitter": "Georgia Institute of Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/727/255/GCA_022727255.1_ASM2272725v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Oscillospiraceae bacterium" ], "sample_taxid": [ "2485925" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mozambique" ], "sample_host_location_id": [], "data_size": "0.989 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3485651", "Number of Sequences": "165", "Longest Sequences (bp)": "144324", "N50 (bp)": "43009", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.1", "Number of CDSs": "3227", "Average Protein Length": "308.5", "Coding Ratio (%)": "85.7", "Number of rRNAs": "0", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ruthenibacterium lactatiformans", "strain": "strain=585-1", "accession": "GCA_000949455.1", "taxid": 1550024, "species_taxid": 1550024, "relation_to_type": "suspected-type", "validated": true, "ani": 99.021, "matched_fragments": 932, "total_fragments": 1080, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Fournierella massiliensis", "strain": "strain=DSM 100451", "accession": "GCA_004345265.1", "taxid": 1650663, "species_taxid": 1650663, "relation_to_type": "type", "validated": true, "ani": 77.4259, "matched_fragments": 200, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Subdoligranulum variabile", "strain": "strain=DSM 15176", "accession": "GCA_000157955.1", "taxid": 214851, "species_taxid": 214851, "relation_to_type": "type", "validated": true, "ani": 77.1048, "matched_fragments": 90, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium prausnitzii", "strain": "strain=ATCC 27768", "accession": "GCA_003324185.1", "taxid": 853, "species_taxid": 853, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0441, "matched_fragments": 114, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bittarella massiliensis", "strain": "strain=GD6", "accession": "GCA_001486165.1", "taxid": 1720313, "species_taxid": 1720313, "relation_to_type": "type", "validated": true, "ani": 77.0427, "matched_fragments": 58, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Subdoligranulum variabile", "strain": "strain=DSM 15176", "accession": "GCA_025152575.1", "taxid": 214851, "species_taxid": 214851, "relation_to_type": "type", "validated": true, "ani": 77.0212, "matched_fragments": 90, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium duncaniae", "strain": "strain=A2-165", "accession": "GCA_000162015.1", "taxid": 411483, "species_taxid": 411483, "relation_to_type": "type", "validated": true, "ani": 76.9245, "matched_fragments": 110, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavonifractor plautii", "strain": "strain=ATCC 29863", "accession": "GCA_000239295.1", "taxid": 292800, "species_taxid": 292800, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8954, "matched_fragments": 66, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium gallinarum", "strain": "strain=JCM 17207", "accession": "GCA_022180365.1", "taxid": 2903556, "species_taxid": 2903556, "relation_to_type": "type", "validated": true, "ani": 76.8897, "matched_fragments": 101, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium duncaniae", "strain": "strain=JCM 31915", "accession": "GCA_010509575.1", "taxid": 411483, "species_taxid": 411483, "relation_to_type": "type", "validated": true, "ani": 76.8794, "matched_fragments": 113, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavonifractor plautii", "strain": "strain=JCM 32125", "accession": "GCA_010508875.1", "taxid": 292800, "species_taxid": 292800, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8767, "matched_fragments": 73, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium hattorii", "strain": "strain=APC922/41-1", "accession": "GCA_003287455.1", "taxid": 2935520, "species_taxid": 2935520, "relation_to_type": "type", "validated": true, "ani": 76.7002, "matched_fragments": 116, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerotruncus massiliensis", "strain": "strain=AT3", "accession": "GCA_900199635.1", "taxid": 1673720, "species_taxid": 1673720, "relation_to_type": "type", "validated": true, "ani": 76.5447, "matched_fragments": 75, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pygmaiobacter massiliensis", "strain": "strain=Marseille-P3336", "accession": "GCA_900199435.1", "taxid": 1917873, "species_taxid": 1917873, "relation_to_type": "type", "validated": true, "ani": 76.3476, "matched_fragments": 51, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000949455.1", "gtdb_species": 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