{
    "type": "genome",
    "identifier": "GCA_022727315.1",
    "organism": "Prevotellaceae bacterium",
    "title": "Prevotellaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022727315.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20301555",
        "wgs_master": "JAIIWS000000000.1",
        "refseq_category": "na",
        "taxid": "2049047",
        "species_taxid": "2049047",
        "organism_name": "Prevotellaceae bacterium",
        "infraspecific_name": "",
        "isolate": "Map_197_011",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2272731v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/727/315/GCA_022727315.1_ASM2272731v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Prevotellaceae bacterium"
        ],
        "sample_taxid": [
            "2049047"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mozambique"
        ],
        "sample_host_location_id": [],
        "data_size": "0.944 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 6.94,
        "strain_heterogeneity": 28.57,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3300238",
        "Number of Sequences": "235",
        "Longest Sequences (bp)": "114740",
        "N50 (bp)": "25446",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.4",
        "Number of CDSs": "2349",
        "Average Protein Length": "368.4",
        "Coding Ratio (%)": "78.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Prevotellamassilia timonensis",
                "strain": "strain=Marseille-P2831",
                "accession": "GCA_900106785.1",
                "taxid": 1852370,
                "species_taxid": 1852370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.6911,
                "matched_fragments": 806,
                "total_fragments": 984,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Xylanibacter rodentium",
                "strain": "strain=PROD",
                "accession": "GCA_013166575.1",
                "taxid": 2736289,
                "species_taxid": 2736289,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1482,
                "matched_fragments": 60,
                "total_fragments": 984,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola plebeius",
                "strain": "strain=DSM 17135",
                "accession": "GCA_000187895.1",
                "taxid": 310297,
                "species_taxid": 310297,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.6289,
                "matched_fragments": 51,
                "total_fragments": 984,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola faecicola",
                "strain": "strain=AGMB03916",
                "accession": "GCA_013618865.1",
                "taxid": 2739389,
                "species_taxid": 2739389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3524,
                "matched_fragments": 54,
                "total_fragments": 984,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alloprevotella rava",
                "strain": "strain=DSM 22548",
                "accession": "GCA_014195585.1",
                "taxid": 671218,
                "species_taxid": 671218,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2447,
                "matched_fragments": 50,
                "total_fragments": 984,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoprevotella muciniphila",
                "strain": "strain=E39",
                "accession": "GCA_003265305.2",
                "taxid": 2133944,
                "species_taxid": 2133944,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2616,
                "matched_fragments": 51,
                "total_fragments": 984,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 6.94,
            "strain_heterogeneity": 28.57
        },
        "gtdb_result": [
            {
                "accession": "GCF_900106785.1",
                "gtdb_species": "s__Alloprevotella timonensis",
                "ani": 96.6834,
                "matched_fragments": 806,
                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.61",
                "min_intra_species_ani": "96.80",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900540885.1",
                "gtdb_species": "s__Alloprevotella sp900540885",
                "ani": 80.3136,
                "matched_fragments": 244,
                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.94",
                "min_intra_species_ani": "97.84",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900541575.1",
                "gtdb_species": "s__Alloprevotella sp900541575",
                "ani": 79.7202,
                "matched_fragments": 198,
                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900543155.1",
                "gtdb_species": "s__Alloprevotella sp900543155",
                "ani": 79.3139,
                "matched_fragments": 202,
                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.25",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900542795.1",
                "gtdb_species": "s__Alloprevotella sp900542795",
                "ani": 79.3129,
                "matched_fragments": 216,
                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.89",
                "min_intra_species_ani": "97.87",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900546605.1",
                "gtdb_species": "s__Alloprevotella sp900546605",
                "ani": 79.0107,
                "matched_fragments": 199,
                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.64",
                "min_intra_species_ani": "98.64",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003477995.1",
                "gtdb_species": "s__Paraprevotella sp003477995",
                "ani": 78.8709,
                "matched_fragments": 73,
                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Paraprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "97.92",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_000437675.1",
                "gtdb_species": "s__Alloprevotella sp000437675",
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                "matched_fragments": 182,
                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.30",
                "min_intra_species_ani": "98.80",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900539625.1",
                "gtdb_species": "s__Alloprevotella sp900539625",
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                "matched_fragments": 146,
                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "97.36",
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                "min_intra_species_af": "0.77",
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            },
            {
                "accession": "GCA_004557185.1",
                "gtdb_species": "s__Alloprevotella sp004557185",
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                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
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                "mean_intra_species_ani": "98.58",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.90",
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            },
            {
                "accession": "GCA_002431845.1",
                "gtdb_species": "s__Alloprevotella sp002431845",
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                "matched_fragments": 166,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004552195.1",
                "gtdb_species": "s__Alloprevotella sp004552195",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002394305.1",
                "gtdb_species": "s__UBA4372 sp002394305",
                "ani": 76.1847,
                "matched_fragments": 51,
                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__UBA4372",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.13",
                "min_intra_species_ani": "97.13",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.225,
        "cell_length": 0.118,
        "doubling_h": null,
        "growth_tmp": 36.775,
        "optimum_tmp": 35.358,
        "optimum_ph": 7.1,
        "genome_size": 3057162.545,
        "gc_content": 45.298,
        "coding_genes": 2508.172,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 50.875,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.976,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.023,
        "vibrio_cell_shape": 0.0,
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    },
    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Alloprevotella",
        "s__Alloprevotella timonensis"
    ],
    "_genome_taxon": [
        "Prevotellaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Alloprevotella",
        "s__Alloprevotella timonensis",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Alloprevotella",
        "Alloprevotella",
        "timonensis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}