{
    "type": "genome",
    "identifier": "GCA_022729025.1",
    "organism": "Diaphorobacter sp.",
    "title": "Diaphorobacter sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Colledge of Environmental Sciences and Engineering, Peking University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022729025.1",
        "bioproject": "PRJNA817706",
        "biosample": "SAMN26806348",
        "wgs_master": "JALDWN000000000.1",
        "refseq_category": "na",
        "taxid": "1934310",
        "species_taxid": "1934310",
        "organism_name": "Diaphorobacter sp.",
        "infraspecific_name": "",
        "isolate": "Ace_metabat.bin.4",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2272902v1",
        "submitter": "Colledge of Environmental Sciences and Engineering, Peking University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/729/025/GCA_022729025.1_ASM2272902v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Diaphorobacter sp."
        ],
        "sample_taxid": [
            "1934310"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Beijing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.939 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3418583",
        "Number of Sequences": "36",
        "Longest Sequences (bp)": "444344",
        "N50 (bp)": "142354",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.1",
        "Number of CDSs": "3145",
        "Average Protein Length": "326.1",
        "Coding Ratio (%)": "90.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Melaminivora alkalimesophila",
                "strain": "strain=CY1",
                "accession": "GCA_000282995.1",
                "taxid": 1165852,
                "species_taxid": 1165852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6822,
                "matched_fragments": 464,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax wautersii",
                "strain": "strain=DSM 27981",
                "accession": "GCA_900113035.1",
                "taxid": 1177982,
                "species_taxid": 1177982,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3413,
                "matched_fragments": 790,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Melaminivora alkalimesophila",
                "strain": "strain=DSM 26006",
                "accession": "GCA_003182375.1",
                "taxid": 1165852,
                "species_taxid": 1165852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.341,
                "matched_fragments": 680,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax caeni",
                "strain": "strain=R-24608",
                "accession": "GCA_900116825.1",
                "taxid": 343013,
                "species_taxid": 343013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1207,
                "matched_fragments": 695,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax caeni",
                "strain": "strain=R-24608",
                "accession": "GCA_001298675.1",
                "taxid": 343013,
                "species_taxid": 343013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9445,
                "matched_fragments": 706,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax anthurii",
                "strain": "strain=CFPB 3232",
                "accession": "GCA_003269065.1",
                "taxid": 78229,
                "species_taxid": 78229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.738,
                "matched_fragments": 755,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Melaminivora jejuensis",
                "strain": "strain=KCTC 32230",
                "accession": "GCA_017811175.1",
                "taxid": 1267217,
                "species_taxid": 1267217,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6518,
                "matched_fragments": 712,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax oryzae",
                "strain": "strain=ATCC 19882",
                "accession": "GCA_000687165.1",
                "taxid": 862720,
                "species_taxid": 862720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2898,
                "matched_fragments": 758,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Delftia acidovorans",
                "strain": "strain=NBRC 14950",
                "accession": "GCA_001598795.1",
                "taxid": 80866,
                "species_taxid": 80866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1964,
                "matched_fragments": 741,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Delftia acidovorans",
                "strain": "strain=FDAARGOS_997",
                "accession": "GCA_016127415.1",
                "taxid": 80866,
                "species_taxid": 80866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1665,
                "matched_fragments": 769,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas phosphati",
                "strain": "strain=CGMCC 1.12294",
                "accession": "GCA_014637085.1",
                "taxid": 1211803,
                "species_taxid": 1211803,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0774,
                "matched_fragments": 640,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax cattleyae",
                "strain": "strain=DSM 17101",
                "accession": "GCA_900104515.1",
                "taxid": 80868,
                "species_taxid": 80868,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0581,
                "matched_fragments": 762,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax facilis",
                "strain": "strain=DSM 649",
                "accession": "GCA_023913775.1",
                "taxid": 12917,
                "species_taxid": 12917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5126,
                "matched_fragments": 733,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Diaphorobacter caeni",
                "strain": "strain=NR2-3-3-1",
                "accession": "GCA_015354245.1",
                "taxid": 2784387,
                "species_taxid": 2784387,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9557,
                "matched_fragments": 691,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Simplicispira metamorpha",
                "strain": "strain=NBRC 13960",
                "accession": "GCA_003568725.1",
                "taxid": 80881,
                "species_taxid": 80881,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8463,
                "matched_fragments": 598,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudorhodoferax aquiterrae",
                "strain": "strain=KCTC 23314",
                "accession": "GCA_014652235.1",
                "taxid": 747304,
                "species_taxid": 747304,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7651,
                "matched_fragments": 697,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga crocea",
                "strain": "strain=BA0156",
                "accession": "GCA_011388215.1",
                "taxid": 2716225,
                "species_taxid": 2716225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6216,
                "matched_fragments": 578,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Diaphorobacter aerolatus",
                "strain": "strain=KACC 16536",
                "accession": "GCA_014489535.1",
                "taxid": 1288495,
                "species_taxid": 1288495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1761,
                "matched_fragments": 630,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter agri",
                "strain": "strain=G-1-2-2",
                "accession": "GCA_012927085.1",
                "taxid": 2728837,
                "species_taxid": 2728837,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6197,
                "matched_fragments": 603,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003755025.1",
                "gtdb_species": "s__Diaphorobacter nitroreducens",
                "ani": 98.4217,
                "matched_fragments": 1055,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.11",
                "min_intra_species_ani": "97.62",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 15,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000204645.1",
                "gtdb_species": "s__Alicycliphilus denitrificans",
                "ani": 86.0907,
                "matched_fragments": 854,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.26",
                "min_intra_species_ani": "95.80",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000400995.2",
                "gtdb_species": "s__MR-S7 sp000400995",
                "ani": 85.7008,
                "matched_fragments": 858,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__MR-S7",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.31",
                "min_intra_species_ani": "97.31",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018241405.1",
                "gtdb_species": "s__Alicycliphilus sp018241405",
                "ani": 84.5534,
                "matched_fragments": 759,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "98.75",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002434305.1",
                "gtdb_species": "s__Pulveribacter sp002434305",
                "ani": 84.2189,
                "matched_fragments": 804,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pulveribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.39",
                "min_intra_species_ani": "97.21",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018242005.1",
                "gtdb_species": "s__Alicycliphilus sp018242005",
                "ani": 84.1087,
                "matched_fragments": 724,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001725235.1",
                "gtdb_species": "s__Acidovorax_C sp001725235",
                "ani": 83.8736,
                "matched_fragments": 742,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "96.90",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018240985.1",
                "gtdb_species": "s__Alicycliphilus sp018240985",
                "ani": 83.8561,
                "matched_fragments": 689,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014489595.1",
                "gtdb_species": "s__Acidovorax_F monticola",
                "ani": 83.8007,
                "matched_fragments": 822,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.51",
                "min_intra_species_ani": "97.51",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018240995.1",
                "gtdb_species": "s__Alicycliphilus sp018240995",
                "ani": 83.4148,
                "matched_fragments": 587,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003604195.1",
                "gtdb_species": "s__Giesbergeria lacusdiani",
                "ani": 83.1858,
                "matched_fragments": 712,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003269065.1",
                "gtdb_species": "s__Acidovorax_A anthurii",
                "ani": 82.7489,
                "matched_fragments": 754,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017811175.1",
                "gtdb_species": "s__Melaminivora_A jejuensis",
                "ani": 82.6287,
                "matched_fragments": 714,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Melaminivora_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000176855.2",
                "gtdb_species": "s__Acidovorax_A avenae",
                "ani": 82.2871,
                "matched_fragments": 758,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.2137,
                "mean_intra_species_ani": "96.92",
                "min_intra_species_ani": "95.92",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.51",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCF_900104515.1",
                "gtdb_species": "s__Acidovorax_A cattleyae",
                "ani": 82.0453,
                "matched_fragments": 764,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.69",
                "min_intra_species_ani": "99.69",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017998575.1",
                "gtdb_species": "s__JAGOCV01 sp017998575",
                "ani": 80.0926,
                "matched_fragments": 432,
                "total_fragments": 1119,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JAGOCV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.241,
        "cell_length": 0.153,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 30.0,
        "optimum_ph": null,
        "genome_size": 3598784.444,
        "gc_content": 66.7,
        "coding_genes": 3614.0,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 53.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.5,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.5,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Diaphorobacter",
        "s__Diaphorobacter nitroreducens"
    ],
    "_genome_taxon": [
        "Diaphorobacter",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Diaphorobacter",
        "s__Diaphorobacter nitroreducens",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Diaphorobacter",
        "Diaphorobacter",
        "nitroreducens"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}