{ "type": "genome", "identifier": "GCA_022729165.1", "organism": "Atlantibacter sp.", "title": "Atlantibacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Colledge of Environmental Sciences and Engineering, Peking University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022729165.1", "bioproject": "PRJNA817706", "biosample": "SAMN26806351", "wgs_master": "JALDWQ000000000.1", "refseq_category": "na", "taxid": "1903473", "species_taxid": "1903473", "organism_name": "Atlantibacter sp.", "infraspecific_name": "", "isolate": "Cel_metabat.bin.14", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2272916v1", "submitter": "Colledge of Environmental Sciences and Engineering, Peking University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/729/165/GCA_022729165.1_ASM2272916v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Atlantibacter sp." ], "sample_taxid": [ "1903473" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Beijing" ], "sample_host_location_id": [], "data_size": "1.219 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 73.77, "contamination": 6.63, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4291507", "Number of Sequences": "34", "Longest Sequences (bp)": "468329", "N50 (bp)": "248132", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.2", "Number of CDSs": "3906", "Average Protein Length": "322.6", "Coding Ratio (%)": "88.1", "Number of rRNAs": "6", "Number of tRNAs": "70", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Atlantibacter hermannii", "strain": "strain=NBRC 105704", "accession": "GCA_000248015.2", "taxid": 565, "species_taxid": 565, "relation_to_type": "type", "validated": true, "ani": 98.8317, "matched_fragments": 1350, "total_fragments": 1412, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Atlantibacter hermannii", "strain": "strain=FDAARGOS_888", "accession": "GCA_016027855.1", "taxid": 565, "species_taxid": 565, "relation_to_type": "type", "validated": true, "ani": 98.8098, "matched_fragments": 1364, "total_fragments": 1412, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter universalis", "strain": "strain=NCTC 9529", "accession": "GCA_000319325.1", "taxid": 535744, "species_taxid": 535744, "relation_to_type": "type", "validated": true, "ani": 80.8656, "matched_fragments": 756, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter dublinensis subsp. lactaridi", "strain": "strain=LMG 23825", "accession": "GCA_000409345.1", "taxid": 413499, "species_taxid": 413497, "relation_to_type": "type", "validated": true, "ani": 80.8324, "matched_fragments": 747, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter dublinensis subsp. lausannensis", "strain": "strain=LMG 23824", "accession": "GCA_000409365.1", "taxid": 413500, "species_taxid": 413497, "relation_to_type": "type", "validated": true, "ani": 80.8005, "matched_fragments": 743, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=FDAARGOS_927", "accession": "GCA_016103025.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 80.749, "matched_fragments": 760, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_000982825.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 80.7438, "matched_fragments": 748, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_001971035.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 80.694, "matched_fragments": 711, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter muytjensii", "strain": "strain=ATCC 51329", "accession": "GCA_000409285.1", "taxid": 413501, "species_taxid": 413501, "relation_to_type": "type", "validated": true, "ani": 80.6869, "matched_fragments": 716, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter muytjensii", "strain": "strain=ATCC 51329", "accession": "GCA_001277195.1", "taxid": 413501, "species_taxid": 413501, "relation_to_type": "type", "validated": true, "ani": 80.6747, "matched_fragments": 724, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter condimenti", "strain": "strain=1330", "accession": "GCA_000319285.1", "taxid": 1163710, "species_taxid": 1163710, "relation_to_type": "type", "validated": true, "ani": 80.4738, "matched_fragments": 666, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter condimenti", "strain": "strain=LMG 26250", "accession": "GCA_001277255.1", "taxid": 1163710, "species_taxid": 1163710, "relation_to_type": "type", "validated": true, "ani": 80.4349, "matched_fragments": 690, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccibacter colletis", "strain": "strain=1383", "accession": "GCA_000696575.1", "taxid": 1505757, "species_taxid": 1505757, "relation_to_type": "type", "validated": true, "ani": 80.3385, "matched_fragments": 692, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccibacter turicensis", "strain": "strain=LMG 23730", "accession": "GCA_000463155.2", "taxid": 357233, "species_taxid": 357233, "relation_to_type": "type", "validated": true, "ani": 80.3324, "matched_fragments": 699, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocitrobacter corydidari", "strain": "", "accession": "GCA_021172065.1", "taxid": 2891570, "species_taxid": 2891570, "relation_to_type": "type", "validated": true, "ani": 80.2293, "matched_fragments": 694, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=ATCC 8090", "accession": "GCA_011064845.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 80.1505, "matched_fragments": 637, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 80.142, "matched_fragments": 734, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=NBRC 12681", "accession": "GCA_000759735.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 80.0799, "matched_fragments": 627, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=PartO-Kpneumoniae-RM8376", "accession": "GCA_022869665.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 80.0523, "matched_fragments": 692, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Raoultella planticola", "strain": "strain=ATCC 33531", "accession": "GCA_000735435.1", "taxid": 575, "species_taxid": 575, "relation_to_type": "type", "validated": true, "ani": 80.0413, "matched_fragments": 641, "total_fragments": 1412, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter freundii", "strain": "strain=MTCC 1658", "accession": "GCA_000312465.1", "taxid": 546, "species_taxid": 546, "relation_to_type": "type", "validated": true, "ani": 80.0383, "matched_fragments": 637, "total_fragments": 1412, "ani_threshold": 95, "status": 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