{ "type": "genome", "identifier": "GCA_022729635.1", "organism": "Flavobacterium psychrophilum", "title": "Flavobacterium psychrophilum", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University Duisburg-Essen", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022729635.1", "bioproject": "PRJNA767587", "biosample": "SAMN22209722", "wgs_master": "DZAU00000000.1", "refseq_category": "na", "taxid": "96345", "species_taxid": "96345", "organism_name": "Flavobacterium psychrophilum", "infraspecific_name": "", "isolate": "SulCav_PC08_66_34_170", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2272963v1", "submitter": "University Duisburg-Essen", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/729/635/GCA_022729635.1_ASM2272963v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium psychrophilum" ], "sample_taxid": [ "96345" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Frasassi cave" ], "sample_host_location_id": [], "data_size": "0.631 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2237878", "Number of Sequences": "201", "Longest Sequences (bp)": "63872", "N50 (bp)": "24627", "Gap Ratio (%)": "0.290454", "GCcontent (%)": "34.5", "Number of CDSs": "1956", "Average Protein Length": "311.0", "Coding Ratio (%)": "81.5", "Number of rRNAs": "0", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium franklandianum", "strain": "strain=LB3P56", "accession": "GCA_007097365.1", "taxid": 2594430, "species_taxid": 2594430, "relation_to_type": "type", "validated": true, "ani": 82.0635, "matched_fragments": 450, "total_fragments": 648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alvei", "strain": "strain=HR-AY", "accession": "GCA_002920895.1", "taxid": 2080416, "species_taxid": 2080416, "relation_to_type": "type", "validated": true, "ani": 81.3772, "matched_fragments": 455, "total_fragments": 648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluvii", "strain": "strain=DSM 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2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 79.441, "matched_fragments": 330, "total_fragments": 648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 79.3738, "matched_fragments": 318, "total_fragments": 648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sandaracinum", "strain": "strain=LB-D12", "accession": "GCA_004349135.1", "taxid": 2541733, "species_taxid": 2541733, "relation_to_type": "type", "validated": true, "ani": 78.8921, "matched_fragments": 277, "total_fragments": 648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium luteum", "strain": "strain=NBRC 112527", "accession": "GCA_008806775.1", "taxid": 2026654, "species_taxid": 2026654, "relation_to_type": "type", "validated": true, "ani": 78.7362, "matched_fragments": 227, "total_fragments": 648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquariorum", "strain": "strain=IMCC34762", "accession": "GCA_003254745.1", "taxid": 2217670, "species_taxid": 2217670, "relation_to_type": "type", "validated": true, "ani": 78.7302, "matched_fragments": 250, "total_fragments": 648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=an-8", "accession": "GCA_014486675.1", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 77.4981, "matched_fragments": 201, "total_fragments": 648, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=LMG 25203", "accession": "GCA_014385475.2", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.523, "cell_length": 0.0, "doubling_h": 1.271, "growth_tmp": 18.5, "optimum_tmp": 14.5, "optimum_ph": 6.5, "genome_size": 2908152.041, "gc_content": 33.376, "coding_genes": 2532.65, "rRNA16S_genes": 5.0, "tRNA_genes": 45.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.333, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 1.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Flavobacterium", "s__Flavobacterium psychrophilum_P" ], "_genome_taxon": [ "Flavobacterium", "psychrophilum", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Flavobacterium", "s__Flavobacterium psychrophilum_P", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Flavobacteriaceae", "Flavobacterium", "Flavobacterium", "psychrophilum", "P" ], "_meo": [ { "id": "MEO_0000366", "label": "ground water" }, { "id": "MEO_0000116", "label": "biofilm" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }