{
    "type": "genome",
    "identifier": "GCA_022729705.1",
    "organism": "Helicobacter cetorum",
    "title": "Helicobacter cetorum",
    "description": "derived from metagenome; genome length too large",
    "data type": "Genome sequencing and assembly",
    "organization": "University Duisburg-Essen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022729705.1",
        "bioproject": "PRJNA767587",
        "biosample": "SAMN22209719",
        "wgs_master": "DZAX00000000.1",
        "refseq_category": "na",
        "taxid": "138563",
        "species_taxid": "138563",
        "organism_name": "Helicobacter cetorum",
        "infraspecific_name": "",
        "isolate": "SulCav_PC08_66_41_1877",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2272970v1",
        "submitter": "University Duisburg-Essen",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/729/705/GCA_022729705.1_ASM2272970v1",
        "excluded_from_refseq": "derived from metagenome; genome length too large",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Helicobacter cetorum"
        ],
        "sample_taxid": [
            "138563"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy: Frasassi cave"
        ],
        "sample_host_location_id": [],
        "data_size": "0.619 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2187181",
        "Number of Sequences": "75",
        "Longest Sequences (bp)": "158941",
        "N50 (bp)": "66445",
        "Gap Ratio (%)": "0.004572",
        "GCcontent (%)": "40.6",
        "Number of CDSs": "2230",
        "Average Protein Length": "289.2",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002428055.1",
                "gtdb_species": "s__UBA6016 sp002428055",
                "ani": 79.2206,
                "matched_fragments": 249,
                "total_fragments": 689,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__UBA6016;g__UBA6016",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.358,
        "cell_length": 0.409,
        "doubling_h": 0.5,
        "growth_tmp": 37.166,
        "optimum_tmp": 36.65,
        "optimum_ph": 7.262,
        "genome_size": 1903950.375,
        "gc_content": 35.039,
        "coding_genes": 1677.5,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 37.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 1.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Campylobacterota",
        "c__Campylobacteria",
        "o__Campylobacterales",
        "f__UBA6016",
        "g__UBA6016",
        "s__UBA6016 sp022729705"
    ],
    "_genome_taxon": [
        "Helicobacter",
        "cetorum",
        "d__Bacteria",
        "p__Campylobacterota",
        "c__Campylobacteria",
        "o__Campylobacterales",
        "f__UBA6016",
        "g__UBA6016",
        "s__UBA6016 sp022729705",
        "Bacteria",
        "Campylobacterota",
        "Campylobacteria",
        "Campylobacterales",
        "UBA6016",
        "UBA6016",
        "UBA6016",
        "sp022729705"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        },
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}