{
    "type": "genome",
    "identifier": "GCA_022730035.1",
    "organism": "Paludibacter propionicigenes",
    "title": "Paludibacter propionicigenes",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University Duisburg-Essen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022730035.1",
        "bioproject": "PRJNA767587",
        "biosample": "SAMN22209697",
        "wgs_master": "DZBT00000000.1",
        "refseq_category": "na",
        "taxid": "185300",
        "species_taxid": "185300",
        "organism_name": "Paludibacter propionicigenes",
        "infraspecific_name": "",
        "isolate": "SulCav_PC08_66_38_37",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2273003v1",
        "submitter": "University Duisburg-Essen",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/730/035/GCA_022730035.1_ASM2273003v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paludibacter propionicigenes"
        ],
        "sample_taxid": [
            "185300"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy: Frasassi cave"
        ],
        "sample_host_location_id": [],
        "data_size": "0.739 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.92,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2587297",
        "Number of Sequences": "329",
        "Longest Sequences (bp)": "61347",
        "N50 (bp)": "14255",
        "Gap Ratio (%)": "0.309203",
        "GCcontent (%)": "37.7",
        "Number of CDSs": "1956",
        "Average Protein Length": "358.6",
        "Coding Ratio (%)": "81.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paludibacter propionicigenes",
                "strain": "strain=WB4",
                "accession": "GCA_000183135.1",
                "taxid": 185300,
                "species_taxid": 185300,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6862,
                "matched_fragments": 108,
                "total_fragments": 697,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 97.92,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903912795.1",
                "gtdb_species": "s__Paludibacter sp903912795",
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                "matched_fragments": 261,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017989795.1",
                "gtdb_species": "s__Paludibacter sp017989795",
                "ani": 78.2598,
                "matched_fragments": 163,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018054805.1",
                "gtdb_species": "s__Paludibacter sp018054805",
                "ani": 77.6894,
                "matched_fragments": 81,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016937795.1",
                "gtdb_species": "s__Paludibacter sp016937795",
                "ani": 77.6888,
                "matched_fragments": 146,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009929375.1",
                "gtdb_species": "s__Paludibacter sp009929375",
                "ani": 77.629,
                "matched_fragments": 178,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002427615.1",
                "gtdb_species": "s__Paludibacter sp002427615",
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                "matched_fragments": 156,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.75",
                "min_intra_species_ani": "99.75",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001873635.1",
                "gtdb_species": "s__Paludibacter sp001873635",
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                "matched_fragments": 173,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903873355.1",
                "gtdb_species": "s__Paludibacter sp903873355",
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                "matched_fragments": 89,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903901975.1",
                "gtdb_species": "s__Paludibacter sp903901975",
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                "matched_fragments": 118,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "99.88",
                "mean_intra_species_af": "0.94",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_903830915.1",
                "gtdb_species": "s__Paludibacter sp903830915",
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                "matched_fragments": 116,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019163375.1",
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                "matched_fragments": 128,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017882285.1",
                "gtdb_species": "s__Paludibacter sp017882285",
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                "matched_fragments": 136,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_010365115.1",
                "gtdb_species": "s__Paludibacter sp010365115",
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                "matched_fragments": 142,
                "total_fragments": 697,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCA_013426815.1",
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            },
            {
                "accession": "GCA_017860345.1",
                "gtdb_species": "s__Paludibacter sp017860345",
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            },
            {
                "accession": "GCA_015654525.1",
                "gtdb_species": "s__Paludibacter sp015654525",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_001898935.1",
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                "matched_fragments": 52,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.113,
        "doubling_h": null,
        "growth_tmp": 25.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 6.6,
        "genome_size": 3685503.2,
        "gc_content": 39.1,
        "coding_genes": 2985.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 53.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Paludibacteraceae",
        "g__Paludibacter",
        "s__Paludibacter sp020726365"
    ],
    "_genome_taxon": [
        "Paludibacter",
        "propionicigenes",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Paludibacteraceae",
        "g__Paludibacter",
        "s__Paludibacter sp020726365",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Paludibacteraceae",
        "Paludibacter",
        "Paludibacter",
        "sp020726365"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        },
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}