{
    "type": "genome",
    "identifier": "GCA_022735255.1",
    "organism": "Escherichia coli",
    "title": "Escherichia coli",
    "description": "derived from metagenome; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022735255.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20302020",
        "wgs_master": "JAIJOO000000000.1",
        "refseq_category": "na",
        "taxid": "562",
        "species_taxid": "562",
        "organism_name": "Escherichia coli",
        "infraspecific_name": "",
        "isolate": "Map_7_007",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2273525v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/735/255/GCA_022735255.1_ASM2273525v1",
        "excluded_from_refseq": "derived from metagenome; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Escherichia coli"
        ],
        "sample_taxid": [
            "562"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mozambique"
        ],
        "sample_host_location_id": [],
        "data_size": "0.756 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2633704",
        "Number of Sequences": "410",
        "Longest Sequences (bp)": "32936",
        "N50 (bp)": "9413",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.0",
        "Number of CDSs": "2160",
        "Average Protein Length": "297.2",
        "Coding Ratio (%)": "73.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Escherichia coli",
                "strain": "strain=DSM 30083",
                "accession": "GCA_024519395.1",
                "taxid": 562,
                "species_taxid": 562,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 99.5929,
                "matched_fragments": 664,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Escherichia coli",
                "strain": "strain=DSM 30083",
                "accession": "GCA_000690815.1",
                "taxid": 562,
                "species_taxid": 562,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 98.789,
                "matched_fragments": 656,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Escherichia coli",
                "strain": "strain=ATCC 11775",
                "accession": "GCA_003697165.2",
                "taxid": 562,
                "species_taxid": 562,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 98.7596,
                "matched_fragments": 658,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Escherichia coli",
                "strain": "strain=ATCC 11775",
                "accession": "GCA_000734955.1",
                "taxid": 562,
                "species_taxid": 562,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 98.7224,
                "matched_fragments": 653,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella sonnei",
                "strain": "strain=NCTC12984",
                "accession": "GCA_900457155.1",
                "taxid": 624,
                "species_taxid": 624,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.2505,
                "matched_fragments": 625,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella sonnei",
                "strain": "strain=ATCC 29930",
                "accession": "GCA_002950395.1",
                "taxid": 624,
                "species_taxid": 624,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.1841,
                "matched_fragments": 626,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella flexneri 2a",
                "strain": "strain=ATCC 29903",
                "accession": "GCA_002950215.1",
                "taxid": 42897,
                "species_taxid": 623,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.0803,
                "matched_fragments": 620,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella boydii",
                "strain": "strain=FDAARGOS_1139",
                "accession": "GCA_016726285.1",
                "taxid": 621,
                "species_taxid": 621,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.9985,
                "matched_fragments": 619,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Escherichia albertii",
                "strain": "strain=NBRC 107761",
                "accession": "GCA_000759775.1",
                "taxid": 208962,
                "species_taxid": 208962,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.6167,
                "matched_fragments": 578,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Escherichia albertii",
                "strain": "strain=DSM 17582",
                "accession": "GCA_022833075.1",
                "taxid": 208962,
                "species_taxid": 208962,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.5358,
                "matched_fragments": 606,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudocitrobacter corydidari",
                "strain": "",
                "accession": "GCA_021172065.1",
                "taxid": 2891570,
                "species_taxid": 2891570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4512,
                "matched_fragments": 439,
                "total_fragments": 672,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003697165.2",
                "gtdb_species": "s__Escherichia coli",
                "ani": 98.7596,
                "matched_fragments": 658,
                "total_fragments": 672,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.07",
                "min_intra_species_ani": "95.57",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 26859,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002965065.1",
                "gtdb_species": "s__Escherichia sp002965065",
                "ani": 94.8776,
                "matched_fragments": 579,
                "total_fragments": 672,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902498915.1",
                "gtdb_species": "s__Escherichia ruysiae",
                "ani": 93.2417,
                "matched_fragments": 625,
                "total_fragments": 672,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.82",
                "min_intra_species_ani": "96.45",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 36,
                "status": "-"
            },
            {
                "accession": "GCF_004211955.1",
                "gtdb_species": "s__Escherichia sp004211955",
                "ani": 93.1451,
                "matched_fragments": 617,
                "total_fragments": 672,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_005843885.1",
                "gtdb_species": "s__Escherichia sp005843885",
                "ani": 92.9616,
                "matched_fragments": 629,
                "total_fragments": 672,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.83",
                "min_intra_species_ani": "95.39",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 37,
                "status": "-"
            },
            {
                "accession": "GCF_011881725.1",
                "gtdb_species": "s__Escherichia coli_E",
                "ani": 92.7965,
                "matched_fragments": 609,
                "total_fragments": 672,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001660175.1",
                "gtdb_species": "s__Escherichia sp001660175",
                "ani": 92.1896,
                "matched_fragments": 622,
                "total_fragments": 672,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.53",
                "min_intra_species_ani": "99.22",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002900365.1",
                "gtdb_species": "s__Escherichia marmotae",
                "ani": 91.4848,
                "matched_fragments": 620,
                "total_fragments": 672,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.02",
                "min_intra_species_ani": "98.77",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 82,
                "status": "-"
            },
            {
                "accession": "GCF_000759775.1",
                "gtdb_species": "s__Escherichia albertii",
                "ani": 90.6167,
                "matched_fragments": 578,
                "total_fragments": 672,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.47",
                "min_intra_species_ani": "97.95",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 107,
                "status": "-"
            },
            {
                "accession": "GCF_000026225.1",
                "gtdb_species": "s__Escherichia fergusonii",
                "ani": 90.4178,
                "matched_fragments": 554,
                "total_fragments": 672,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 77,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.288,
        "cell_length": 0.301,
        "doubling_h": -0.472,
        "growth_tmp": 37.875,
        "optimum_tmp": 36.971,
        "optimum_ph": 6.75,
        "genome_size": 5146432.283,
        "gc_content": 50.433,
        "coding_genes": 4934.661,
        "rRNA16S_genes": 7.101,
        "tRNA_genes": 90.772,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae",
        "g__Escherichia",
        "s__Escherichia coli"
    ],
    "_genome_taxon": [
        "Escherichia",
        "coli",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae",
        "g__Escherichia",
        "s__Escherichia coli",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Enterobacterales",
        "Enterobacteriaceae",
        "Escherichia",
        "Escherichia",
        "coli"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}