{
    "type": "genome",
    "identifier": "GCA_022738015.1",
    "organism": "Bifidobacterium catenulatum",
    "title": "Bifidobacterium catenulatum",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022738015.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20301440",
        "wgs_master": "JAIISH000000000.1",
        "refseq_category": "na",
        "taxid": "1686",
        "species_taxid": "1686",
        "organism_name": "Bifidobacterium catenulatum",
        "infraspecific_name": "",
        "isolate": "Map_175_001",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2273801v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/738/015/GCA_022738015.1_ASM2273801v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium catenulatum"
        ],
        "sample_taxid": [
            "1686"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mozambique"
        ],
        "sample_host_location_id": [],
        "data_size": "0.623 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 93.75,
        "contamination": 2.08,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2178834",
        "Number of Sequences": "134",
        "Longest Sequences (bp)": "128178",
        "N50 (bp)": "36964",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.8",
        "Number of CDSs": "1721",
        "Average Protein Length": "342.7",
        "Coding Ratio (%)": "81.2",
        "Number of rRNAs": "6",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Bifidobacterium catenulatum subsp. kashiwanohense",
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                "accession": "GCA_000771545.1",
                "taxid": 630129,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.7007,
                "matched_fragments": 572,
                "total_fragments": 667,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium catenulatum subsp. kashiwanohense",
                "strain": "strain=JCM 15439",
                "accession": "GCA_001042615.1",
                "taxid": 630129,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.6099,
                "matched_fragments": 579,
                "total_fragments": 667,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium catenulatum subsp. kashiwanohense",
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                "accession": "GCA_000741605.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 95.5901,
                "matched_fragments": 580,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bifidobacterium catenulatum",
                "strain": "strain=LMG 11043",
                "accession": "GCA_000741565.1",
                "taxid": 1686,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.958,
                "matched_fragments": 528,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium catenulatum",
                "strain": "strain=DSM 16992",
                "accession": "GCA_000173455.1",
                "taxid": 1686,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.9305,
                "matched_fragments": 529,
                "total_fragments": 667,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium catenulatum",
                "strain": "strain=JCM 1194",
                "accession": "GCA_001025195.1",
                "taxid": 1686,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.8764,
                "matched_fragments": 535,
                "total_fragments": 667,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium catenulatum",
                "strain": "strain=DSM 16992",
                "accession": "GCA_000771025.1",
                "taxid": 1686,
                "species_taxid": 1686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.8655,
                "matched_fragments": 505,
                "total_fragments": 667,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium pseudocatenulatum",
                "strain": "strain=DSM 20438",
                "accession": "GCA_000771445.1",
                "taxid": 28026,
                "species_taxid": 28026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.6622,
                "matched_fragments": 556,
                "total_fragments": 667,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium pseudocatenulatum",
                "strain": "strain=DSM 20438",
                "accession": "GCA_000173435.1",
                "taxid": 28026,
                "species_taxid": 28026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.6257,
                "matched_fragments": 558,
                "total_fragments": 667,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium miconisargentati",
                "strain": "strain=82T25",
                "accession": "GCA_019331675.1",
                "taxid": 2834437,
                "species_taxid": 2834437,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6898,
                "matched_fragments": 252,
                "total_fragments": 667,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium amazonense",
                "strain": "strain=MA1",
                "accession": "GCA_018555435.2",
                "taxid": 2809027,
                "species_taxid": 2809027,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6422,
                "matched_fragments": 253,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium scardovii",
                "strain": "strain=DSM 13734",
                "accession": "GCA_000770985.1",
                "taxid": 158787,
                "species_taxid": 158787,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4528,
                "matched_fragments": 261,
                "total_fragments": 667,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium mizhiense",
                "strain": "strain=S053-2",
                "accession": "GCA_020884755.1",
                "taxid": 2879940,
                "species_taxid": 2879940,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0786,
                "matched_fragments": 76,
                "total_fragments": 667,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 93.75,
            "contamination": 2.08,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000800455.1",
                "gtdb_species": "s__Bifidobacterium kashiwanohense_A",
                "ani": 96.5524,
                "matched_fragments": 582,
                "total_fragments": 667,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.1942,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001042615.1",
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                "matched_fragments": 580,
                "total_fragments": 667,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 96.3948,
                "mean_intra_species_ani": "99.07",
                "min_intra_species_ani": "97.92",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001025195.1",
                "gtdb_species": "s__Bifidobacterium catenulatum",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
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                "mean_intra_species_ani": "99.04",
                "min_intra_species_ani": "98.03",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_002742445.1",
                "gtdb_species": "s__Bifidobacterium sp002742445",
                "ani": 94.5251,
                "matched_fragments": 555,
                "total_fragments": 667,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.43",
                "min_intra_species_ani": "96.66",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 9,
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            },
            {
                "accession": "GCF_001025215.1",
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                "matched_fragments": 561,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.12",
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                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 112,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.022,
        "cell_length": 0.328,
        "doubling_h": 0.178,
        "growth_tmp": 37.0,
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        "genome_size": 2075635.8,
        "gc_content": 56.15,
        "coding_genes": 1669.0,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 55.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Bifidobacteriaceae",
        "g__Bifidobacterium",
        "s__Bifidobacterium kashiwanohense_A"
    ],
    "_genome_taxon": [
        "Bifidobacterium",
        "catenulatum",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Bifidobacteriaceae",
        "g__Bifidobacterium",
        "s__Bifidobacterium kashiwanohense_A",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Bifidobacteriaceae",
        "Bifidobacterium",
        "Bifidobacterium",
        "kashiwanohense",
        "A"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}