{
    "type": "genome",
    "identifier": "GCA_022738535.1",
    "organism": "Limosilactobacillus mucosae",
    "title": "Limosilactobacillus mucosae",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022738535.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20301083",
        "wgs_master": "JAIIEO000000000.1",
        "refseq_category": "na",
        "taxid": "97478",
        "species_taxid": "97478",
        "organism_name": "Limosilactobacillus mucosae",
        "infraspecific_name": "",
        "isolate": "Map_113_023",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2273853v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/738/535/GCA_022738535.1_ASM2273853v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Limosilactobacillus mucosae"
        ],
        "sample_taxid": [
            "97478"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mozambique"
        ],
        "sample_host_location_id": [],
        "data_size": "0.526 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1823001",
        "Number of Sequences": "539",
        "Longest Sequences (bp)": "19230",
        "N50 (bp)": "4441",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.1",
        "Number of CDSs": "1414",
        "Average Protein Length": "266.6",
        "Coding Ratio (%)": "62.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Limosilactobacillus mucosae",
                "strain": "strain=DSM 13345",
                "accession": "GCA_001436025.1",
                "taxid": 97478,
                "species_taxid": 97478,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.9319,
                "matched_fragments": 316,
                "total_fragments": 332,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus fermentum",
                "strain": "strain=DSM 20052",
                "accession": "GCA_013394085.1",
                "taxid": 1613,
                "species_taxid": 1613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2543,
                "matched_fragments": 63,
                "total_fragments": 332,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus fermentum",
                "strain": "strain=B1 28",
                "accession": "GCA_005341425.1",
                "taxid": 1613,
                "species_taxid": 1613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2543,
                "matched_fragments": 63,
                "total_fragments": 332,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus fermentum",
                "strain": "strain=ATCC 14931",
                "accession": "GCA_000159215.1",
                "taxid": 1613,
                "species_taxid": 1613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2513,
                "matched_fragments": 62,
                "total_fragments": 332,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus panis",
                "strain": "strain=DSM 6035",
                "accession": "GCA_001435935.1",
                "taxid": 47493,
                "species_taxid": 47493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0415,
                "matched_fragments": 52,
                "total_fragments": 332,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus panis",
                "strain": "strain=DSM 6035",
                "accession": "GCA_001027985.1",
                "taxid": 47493,
                "species_taxid": 47493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7707,
                "matched_fragments": 53,
                "total_fragments": 332,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus oris",
                "strain": "strain=DSM 4864",
                "accession": "GCA_001434465.1",
                "taxid": 1632,
                "species_taxid": 1632,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3076,
                "matched_fragments": 62,
                "total_fragments": 332,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus secaliphilus",
                "strain": "strain=DSM 17896",
                "accession": "GCA_001437055.1",
                "taxid": 396268,
                "species_taxid": 396268,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0411,
                "matched_fragments": 71,
                "total_fragments": 332,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001436025.1",
                "gtdb_species": "s__Limosilactobacillus mucosae",
                "ani": 96.9319,
                "matched_fragments": 316,
                "total_fragments": 332,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.05",
                "min_intra_species_ani": "95.70",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 22,
                "status": "conclusive"
            },
            {
                "accession": "GCF_012843675.1",
                "gtdb_species": "s__Limosilactobacillus sp012843675",
                "ani": 87.2842,
                "matched_fragments": 295,
                "total_fragments": 332,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.07",
                "min_intra_species_ani": "98.07",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013394085.1",
                "gtdb_species": "s__Limosilactobacillus fermentum",
                "ani": 79.2543,
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                "total_fragments": 332,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.65",
                "min_intra_species_ani": "97.32",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.60",
                "num_clustered_genomes": 102,
                "status": "-"
            },
            {
                "accession": "GCF_001435345.1",
                "gtdb_species": "s__Limosilactobacillus pontis",
                "ani": 79.0527,
                "matched_fragments": 54,
                "total_fragments": 332,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
                "min_intra_species_ani": "97.66",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001435935.1",
                "gtdb_species": "s__Limosilactobacillus panis",
                "ani": 79.0415,
                "matched_fragments": 52,
                "total_fragments": 332,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905214235.1",
                "gtdb_species": "s__Limosilactobacillus sp905214235",
                "ani": 78.7935,
                "matched_fragments": 54,
                "total_fragments": 332,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000160835.1",
                "gtdb_species": "s__Limosilactobacillus antri",
                "ani": 78.6973,
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                "total_fragments": 332,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
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                "mean_intra_species_ani": "99.98",
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                "mean_intra_species_af": "0.99",
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            },
            {
                "accession": "GCF_002940945.1",
                "gtdb_species": "s__Limosilactobacillus pontis_A",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_019114515.1",
                "gtdb_species": "s__Limosilactobacillus merdigallinarum",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCF_001434465.1",
                "gtdb_species": "s__Limosilactobacillus oris",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
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                "mean_intra_species_ani": "97.39",
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                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 8,
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Bacillota",
        "c__Bacilli",
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        "f__Lactobacillaceae",
        "g__Limosilactobacillus",
        "s__Limosilactobacillus mucosae"
    ],
    "_genome_taxon": [
        "Limosilactobacillus",
        "mucosae",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Limosilactobacillus",
        "s__Limosilactobacillus mucosae",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Lactobacillaceae",
        "Limosilactobacillus",
        "Limosilactobacillus",
        "mucosae"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}