{
    "type": "genome",
    "identifier": "GCA_022739095.1",
    "organism": "Bifidobacterium sp.",
    "title": "Bifidobacterium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022739095.1",
        "bioproject": "PRJNA747761",
        "biosample": "SAMN20301754",
        "wgs_master": "JAIJEI000000000.1",
        "refseq_category": "na",
        "taxid": "41200",
        "species_taxid": "41200",
        "organism_name": "Bifidobacterium sp.",
        "infraspecific_name": "",
        "isolate": "Map_4_007",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/28",
        "asm_name": "ASM2273909v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/739/095/GCA_022739095.1_ASM2273909v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-28",
    "dateModified": "2022-03-28",
    "datePublished": "2022-03-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium sp."
        ],
        "sample_taxid": [
            "41200"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mozambique"
        ],
        "sample_host_location_id": [],
        "data_size": "0.604 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 66.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2120222",
        "Number of Sequences": "299",
        "Longest Sequences (bp)": "64391",
        "N50 (bp)": "10541",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.8",
        "Number of CDSs": "1705",
        "Average Protein Length": "300.8",
        "Coding Ratio (%)": "72.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Bifidobacterium longum subsp. infantis",
                "strain": "strain=DSM 20088",
                "accession": "GCA_000771105.1",
                "taxid": 1682,
                "species_taxid": 216816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.5433,
                "matched_fragments": 438,
                "total_fragments": 558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium longum subsp. suillum",
                "strain": "strain=JCM 19995",
                "accession": "GCA_017132755.1",
                "taxid": 1931217,
                "species_taxid": 216816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.5277,
                "matched_fragments": 408,
                "total_fragments": 558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium longum subsp. suillum",
                "strain": "strain=SU-851",
                "accession": "GCA_016882605.1",
                "taxid": 1931217,
                "species_taxid": 216816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.4818,
                "matched_fragments": 415,
                "total_fragments": 558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium longum subsp. suis",
                "strain": "strain=DSM 20211",
                "accession": "GCA_000771285.1",
                "taxid": 1695,
                "species_taxid": 216816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.4539,
                "matched_fragments": 401,
                "total_fragments": 558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium longum subsp. infantis",
                "strain": "strain=ATCC 15697",
                "accession": "GCA_000020425.1",
                "taxid": 1682,
                "species_taxid": 216816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.405,
                "matched_fragments": 459,
                "total_fragments": 558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium longum subsp. infantis",
                "strain": "strain=NCTC11817",
                "accession": "GCA_900637215.1",
                "taxid": 1682,
                "species_taxid": 216816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.3091,
                "matched_fragments": 464,
                "total_fragments": 558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium longum subsp. infantis",
                "strain": "strain=JCM 1222",
                "accession": "GCA_000269965.1",
                "taxid": 1682,
                "species_taxid": 216816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.294,
                "matched_fragments": 464,
                "total_fragments": 558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium longum subsp. longum",
                "strain": "strain=LMG 13197",
                "accession": "GCA_000741245.1",
                "taxid": 1679,
                "species_taxid": 216816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.1405,
                "matched_fragments": 392,
                "total_fragments": 558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium longum subsp. longum",
                "strain": "strain=JCM 1217",
                "accession": "GCA_000196555.1",
                "taxid": 1679,
                "species_taxid": 216816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.1301,
                "matched_fragments": 391,
                "total_fragments": 558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium longum",
                "strain": "strain=NCTC11818",
                "accession": "GCA_900637335.1",
                "taxid": 216816,
                "species_taxid": 216816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.1035,
                "matched_fragments": 392,
                "total_fragments": 558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium longum",
                "strain": "strain=DSM 20219",
                "accession": "GCA_900104835.1",
                "taxid": 216816,
                "species_taxid": 216816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.0808,
                "matched_fragments": 393,
                "total_fragments": 558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium longum subsp. longum",
                "strain": "strain=KCTC 3128",
                "accession": "GCA_017132775.1",
                "taxid": 1679,
                "species_taxid": 216816,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.0265,
                "matched_fragments": 390,
                "total_fragments": 558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bifidobacterium miconisargentati",
                "strain": "strain=82T25",
                "accession": "GCA_019331675.1",
                "taxid": 2834437,
                "species_taxid": 2834437,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8252,
                "matched_fragments": 327,
                "total_fragments": 558,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 66.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000269965.1",
                "gtdb_species": "s__Bifidobacterium infantis",
                "ani": 94.294,
                "matched_fragments": 464,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.68",
                "min_intra_species_ani": "97.44",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 49,
                "status": "-"
            },
            {
                "accession": "GCF_000196555.1",
                "gtdb_species": "s__Bifidobacterium longum",
                "ani": 94.0826,
                "matched_fragments": 393,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "95.59",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.67",
                "num_clustered_genomes": 481,
                "status": "-"
            },
            {
                "accession": "GCF_001025175.1",
                "gtdb_species": "s__Bifidobacterium breve",
                "ani": 86.0248,
                "matched_fragments": 354,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.58",
                "min_intra_species_ani": "97.75",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 170,
                "status": "-"
            },
            {
                "accession": "GCF_018555355.1",
                "gtdb_species": "s__Bifidobacterium sp018555355",
                "ani": 83.8548,
                "matched_fragments": 331,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.26",
                "min_intra_species_ani": "96.26",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003129905.1",
                "gtdb_species": "s__Bifidobacterium callitrichidarum",
                "ani": 83.848,
                "matched_fragments": 323,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002259745.1",
                "gtdb_species": "s__Bifidobacterium myosotis",
                "ani": 82.8257,
                "matched_fragments": 319,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.86",
                "min_intra_species_ani": "96.74",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_009193305.1",
                "gtdb_species": "s__Bifidobacterium cebidarum",
                "ani": 82.3802,
                "matched_fragments": 278,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012932425.1",
                "gtdb_species": "s__Bifidobacterium sp012932425",
                "ani": 81.157,
                "matched_fragments": 256,
                "total_fragments": 558,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.022,
        "cell_length": 0.328,
        "doubling_h": 0.178,
        "growth_tmp": 36.851,
        "optimum_tmp": 36.466,
        "optimum_ph": 6.377,
        "genome_size": 2304203.81,
        "gc_content": 59.795,
        "coding_genes": 1746.874,
        "rRNA16S_genes": 3.765,
        "tRNA_genes": 52.571,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.043,
        "range_salinity": 0.0,
        "facultative_respiration": 0.147,
        "anaerobic_respiration": 0.823,
        "aerobic_respiration": 0.029,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Bifidobacteriaceae",
        "g__Bifidobacterium",
        "s__Bifidobacterium sp022739095"
    ],
    "_genome_taxon": [
        "Bifidobacterium",
        "sp.",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Bifidobacteriaceae",
        "g__Bifidobacterium",
        "s__Bifidobacterium sp022739095",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Bifidobacteriaceae",
        "Bifidobacterium",
        "Bifidobacterium",
        "sp022739095"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}